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Iron in PDB 4ugw: Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine

Enzymatic activity of Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine

All present enzymatic activity of Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine:
1.14.13.165;

Protein crystallography data

The structure of Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine, PDB code: 4ugw was solved by J.K.Holden, T.L.Poulos, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.56 / 1.90
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 80.520, 94.770, 61.590, 90.00, 90.00, 90.00
R / Rfree (%) 15.5 / 20.1

Other elements in 4ugw:

The structure of Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine (pdb code 4ugw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine, PDB code: 4ugw:

Iron binding site 1 out of 1 in 4ugw

Go back to Iron Binding Sites List in 4ugw
Iron binding site 1 out of 1 in the Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of Y357F Bacillus Subtilis Nitric Oxide Synthase in Complex with 6-(5-((3R,4R)-4-((6-Azanyl-4-Methyl-Pyridin-2-Yl)Methyl) Pyrrolidin-3-Yl)Oxypentyl)-4-Methyl-Pyridin-2-Amine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe901

b:15.1
occ:1.00
 FE A:HEM901 0.0 15.1 1.0
ND A:HEM901 1.9 13.7 1.0
NA A:HEM901 2.0 13.3 1.0
NC A:HEM901 2.1 15.8 1.0
NB A:HEM901 2.1 15.6 1.0
SG A:CYS66 2.5 15.3 1.0
C1D A:HEM901 2.9 12.8 1.0
C4D A:HEM901 3.0 15.5 1.0
C1A A:HEM901 3.0 17.5 1.0
C4A A:HEM901 3.1 8.8 1.0
C4C A:HEM901 3.1 18.1 1.0
C4B A:HEM901 3.1 14.2 1.0
C1B A:HEM901 3.1 11.9 1.0
C1C A:HEM901 3.1 14.4 1.0
CB A:CYS66 3.3 12.2 1.0
CHD A:HEM901 3.4 13.8 1.0
CHA A:HEM901 3.4 17.6 1.0
CHB A:HEM901 3.5 10.8 1.0
CHC A:HEM901 3.5 14.8 1.0
C24 A:HW1904 3.8 17.9 1.0
C23 A:HW1904 4.1 11.8 1.0
C25 A:HW1904 4.1 16.4 1.0
CA A:CYS66 4.1 14.8 1.0
C27 A:HW1904 4.2 15.8 1.0
C2D A:HEM901 4.2 14.1 1.0
C3A A:HEM901 4.2 20.2 1.0
C3D A:HEM901 4.2 13.5 1.0
C2A A:HEM901 4.2 13.7 1.0
C2C A:HEM901 4.3 18.9 1.0
C3C A:HEM901 4.3 18.5 1.0
C2B A:HEM901 4.3 13.2 1.0
C3B A:HEM901 4.4 17.2 1.0
NE1 A:TRP60 4.4 13.9 1.0
C26 A:HW1904 4.5 19.9 1.0
C22 A:HW1904 4.5 12.4 1.0
N21 A:HW1904 4.6 14.4 1.0
N A:GLY68 4.9 17.2 1.0
C A:CYS66 4.9 14.5 1.0

Reference:

J.K.Holden, D.Dejam, M.C.Lewis, H.Huang, S.Kang, Q.Jing, F.Xue, R.B.Silverman, T.L.Poulos. Inhibitor Bound Crystal Structures of Bacterial Nitric Oxide Synthase. Biochemistry V. 54 4075 2015.
ISSN: ISSN 0006-2960
PubMed: 26062720
DOI: 10.1021/ACS.BIOCHEM.5B00431
Page generated: Mon Aug 5 12:47:00 2024

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