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Iron in PDB 4uq8: Electron Cryo-Microscopy of Bovine Complex I

Iron Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Electron Cryo-Microscopy of Bovine Complex I (pdb code 4uq8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Electron Cryo-Microscopy of Bovine Complex I, PDB code: 4uq8:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 4uq8

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Iron binding site 1 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE1 B:SF4201 0.0 30.0 1.0
SG B:CYS119 1.9 30.0 1.0
S3 B:SF4201 2.3 30.0 1.0
S4 B:SF4201 2.3 30.0 1.0
S2 B:SF4201 2.3 30.0 1.0
FE4 B:SF4201 2.6 30.0 1.0
FE2 B:SF4201 2.7 30.0 1.0
FE3 B:SF4201 2.8 30.0 1.0
CB B:CYS119 3.2 30.0 1.0
S1 B:SF4201 3.9 30.0 1.0
N B:CYS119 4.1 30.0 1.0
CA B:CYS119 4.2 30.0 1.0
CB B:UNK118 4.2 30.0 1.0
SG B:CYS149 4.6 30.0 1.0
CB B:UNK122 4.6 30.0 1.0
SG B:CYS55 4.8 30.0 1.0
SG B:CYS54 5.0 30.0 1.0

Iron binding site 2 out of 28 in 4uq8

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Iron binding site 2 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE2 B:SF4201 0.0 30.0 1.0
S1 B:SF4201 2.3 30.0 1.0
S4 B:SF4201 2.3 30.0 1.0
S3 B:SF4201 2.3 30.0 1.0
SG B:CYS55 2.3 30.0 1.0
FE1 B:SF4201 2.7 30.0 1.0
FE3 B:SF4201 2.7 30.0 1.0
FE4 B:SF4201 2.7 30.0 1.0
CB B:CYS55 3.4 30.0 1.0
N B:CYS55 3.6 30.0 1.0
CA B:CYS55 3.6 30.0 1.0
S2 B:SF4201 3.9 30.0 1.0
CA B:UNK150 4.1 30.0 1.0
CB B:UNK117 4.1 30.0 1.0
SG B:CYS119 4.2 30.0 1.0
CB B:UNK150 4.4 30.0 1.0
CB B:CYS119 4.6 30.0 1.0
C B:CYS54 4.7 30.0 1.0
SG B:CYS54 4.7 30.0 1.0
N B:UNK150 4.7 30.0 1.0
CA B:CYS149 4.8 30.0 1.0
SG B:CYS149 4.9 30.0 1.0

Iron binding site 3 out of 28 in 4uq8

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Iron binding site 3 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE3 B:SF4201 0.0 30.0 1.0
S2 B:SF4201 2.3 30.0 1.0
S4 B:SF4201 2.3 30.0 1.0
S1 B:SF4201 2.3 30.0 1.0
SG B:CYS54 2.3 30.0 1.0
FE2 B:SF4201 2.7 30.0 1.0
FE4 B:SF4201 2.7 30.0 1.0
FE1 B:SF4201 2.8 30.0 1.0
CB B:CYS54 3.4 30.0 1.0
N B:CYS55 3.9 30.0 1.0
N B:CYS54 3.9 30.0 1.0
S3 B:SF4201 3.9 30.0 1.0
CA B:CYS54 4.1 30.0 1.0
CB B:UNK53 4.3 30.0 1.0
SG B:CYS119 4.3 30.0 1.0
C B:CYS54 4.4 30.0 1.0
SG B:CYS55 4.7 30.0 1.0
SG B:CYS149 4.8 30.0 1.0
CA B:CYS55 4.8 30.0 1.0

Iron binding site 4 out of 28 in 4uq8

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Iron binding site 4 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE4 B:SF4201 0.0 30.0 1.0
SG B:CYS149 2.3 30.0 1.0
S1 B:SF4201 2.3 30.0 1.0
S2 B:SF4201 2.3 30.0 1.0
S3 B:SF4201 2.3 30.0 1.0
FE1 B:SF4201 2.6 30.0 1.0
FE3 B:SF4201 2.7 30.0 1.0
FE2 B:SF4201 2.7 30.0 1.0
CB B:CYS149 3.2 30.0 1.0
CA B:CYS149 3.5 30.0 1.0
C B:CYS149 3.7 30.0 1.0
S4 B:SF4201 3.9 30.0 1.0
N B:UNK150 3.9 30.0 1.0
CA B:UNK150 4.2 30.0 1.0
O B:CYS149 4.2 30.0 1.0
SG B:CYS119 4.5 30.0 1.0
CB B:UNK118 4.6 30.0 1.0
SG B:CYS54 4.8 30.0 1.0
N B:CYS149 4.8 30.0 1.0
SG B:CYS55 4.9 30.0 1.0

Iron binding site 5 out of 28 in 4uq8

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Iron binding site 5 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:37.5
occ:1.00
 FE1 E:FES201 0.0 37.5 1.0
S1 E:FES201 2.2 37.5 1.0
S2 E:FES201 2.2 37.5 1.0
SG E:CYS103 2.3 30.0 1.0
SG E:CYS108 2.3 30.0 1.0
FE2 E:FES201 3.1 37.5 1.0
CB E:CYS108 3.2 30.0 1.0
CB E:CYS103 3.3 30.0 1.0
N E:UNK145 3.9 30.0 1.0
N E:CYS108 4.0 30.0 1.0
CA E:CYS108 4.1 30.0 1.0
CA E:CYS144 4.3 30.0 1.0
CB E:UNK105 4.4 30.0 1.0
O E:UNK105 4.5 30.0 1.0
CA E:CYS103 4.6 30.0 1.0
C E:CYS144 4.7 30.0 1.0
SG E:CYS144 4.7 30.0 1.0
N E:UNK105 4.7 30.0 1.0
C E:CYS103 4.7 30.0 1.0
CB E:CYS144 4.8 30.0 1.0
O E:UNK147 4.8 30.0 1.0
O E:CYS103 4.9 30.0 1.0
CB E:UNK145 4.9 30.0 1.0
CA E:UNK105 4.9 30.0 1.0
SG E:CYS148 5.0 30.0 1.0
CA E:UNK145 5.0 30.0 1.0

Iron binding site 6 out of 28 in 4uq8

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Iron binding site 6 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:37.5
occ:1.00
 FE2 E:FES201 0.0 37.5 1.0
S1 E:FES201 2.2 37.5 1.0
S2 E:FES201 2.2 37.5 1.0
SG E:CYS144 2.3 30.0 1.0
SG E:CYS148 2.3 30.0 1.0
FE1 E:FES201 3.1 37.5 1.0
O F:UNK102 3.4 30.0 1.0
CB E:CYS144 3.5 30.0 1.0
C F:UNK102 3.7 30.0 1.0
CB E:CYS148 3.7 30.0 1.0
CA F:UNK102 3.8 30.0 1.0
CA E:CYS144 3.9 30.0 1.0
N E:UNK146 4.0 30.0 1.0
N E:UNK145 4.0 30.0 1.0
CA E:CYS148 4.2 30.0 1.0
N E:CYS148 4.2 30.0 1.0
C E:CYS144 4.3 30.0 1.0
CB F:UNK103 4.3 30.0 1.0
N E:UNK147 4.4 30.0 1.0
CB E:UNK107 4.4 30.0 1.0
CB F:UNK102 4.4 30.0 1.0
C E:UNK147 4.5 30.0 1.0
CA E:UNK146 4.5 30.0 1.0
N F:UNK103 4.5 30.0 1.0
SG E:CYS103 4.7 30.0 1.0
O E:UNK147 4.8 30.0 1.0
C E:UNK146 4.9 30.0 1.0
C E:UNK145 4.9 30.0 1.0
N F:UNK102 4.9 30.0 1.0
CA E:UNK145 5.0 30.0 1.0

Iron binding site 7 out of 28 in 4uq8

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Iron binding site 7 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE1 F:SF4508 0.0 37.0 1.0
S2 F:SF4508 2.3 37.0 1.0
S3 F:SF4508 2.3 37.0 1.0
SG F:CYS362 2.3 30.0 1.0
S4 F:SF4508 2.3 37.0 1.0
FE2 F:SF4508 2.7 37.0 1.0
FE4 F:SF4508 2.7 37.0 1.0
FE3 F:SF4508 2.8 37.0 1.0
CB F:CYS362 3.0 30.0 1.0
CB F:UNK404 3.5 30.0 1.0
N F:CYS362 3.6 30.0 1.0
CA F:CYS362 3.9 30.0 1.0
S1 F:SF4508 3.9 37.0 1.0
N F:CYS405 4.0 30.0 1.0
CB F:CYS365 4.1 30.0 1.0
N F:UNK404 4.1 30.0 1.0
CA F:UNK404 4.3 30.0 1.0
SG F:CYS365 4.5 30.0 1.0
CB F:UNK408 4.5 30.0 1.0
C F:UNK404 4.6 30.0 1.0
C F:UNK361 4.6 30.0 1.0
SG F:CYS359 4.8 30.0 1.0
SG F:CYS405 4.8 30.0 1.0
O F:CYS405 4.8 30.0 1.0
CA F:CYS405 4.9 30.0 1.0
C F:CYS362 4.9 30.0 1.0
N F:UNK361 4.9 30.0 1.0
O F:CYS362 5.0 30.0 1.0
CB F:UNK361 5.0 30.0 1.0

Iron binding site 8 out of 28 in 4uq8

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Iron binding site 8 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE2 F:SF4508 0.0 37.0 1.0
SG F:CYS365 2.3 30.0 1.0
S1 F:SF4508 2.3 37.0 1.0
S4 F:SF4508 2.3 37.0 1.0
S3 F:SF4508 2.3 37.0 1.0
FE4 F:SF4508 2.6 37.0 1.0
FE1 F:SF4508 2.7 37.0 1.0
FE3 F:SF4508 2.7 37.0 1.0
CB F:CYS365 3.0 30.0 1.0
CB F:UNK408 3.4 30.0 1.0
S2 F:SF4508 3.8 37.0 1.0
N F:CYS359 4.4 30.0 1.0
CA F:UNK358 4.4 30.0 1.0
CB F:UNK358 4.5 30.0 1.0
CA F:CYS365 4.5 30.0 1.0
CA F:UNK408 4.7 30.0 1.0
SG F:CYS362 4.7 30.0 1.0
CB F:CYS362 4.8 30.0 1.0
SG F:CYS359 4.8 30.0 1.0
SG F:CYS405 4.9 30.0 1.0
C F:UNK358 4.9 30.0 1.0
N F:UNK360 5.0 30.0 1.0

Iron binding site 9 out of 28 in 4uq8

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Iron binding site 9 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE3 F:SF4508 0.0 37.0 1.0
S4 F:SF4508 2.3 37.0 1.0
S2 F:SF4508 2.3 37.0 1.0
S1 F:SF4508 2.3 37.0 1.0
SG F:CYS405 2.3 30.0 1.0
FE2 F:SF4508 2.7 37.0 1.0
FE4 F:SF4508 2.7 37.0 1.0
FE1 F:SF4508 2.8 37.0 1.0
CB F:UNK408 3.1 30.0 1.0
CB F:CYS405 3.3 30.0 1.0
N F:UNK408 3.7 30.0 1.0
N F:CYS405 3.7 30.0 1.0
CA F:CYS405 3.8 30.0 1.0
O F:CYS405 4.0 30.0 1.0
S3 F:SF4508 4.0 37.0 1.0
CA F:UNK408 4.0 30.0 1.0
C F:CYS405 4.1 30.0 1.0
SG F:CYS359 4.7 30.0 1.0
SG F:CYS365 4.7 30.0 1.0
N F:UNK407 4.8 30.0 1.0
C F:UNK404 4.8 30.0 1.0
C F:UNK407 4.8 30.0 1.0
SG F:CYS362 4.9 30.0 1.0
CB F:UNK407 4.9 30.0 1.0
CB F:UNK404 4.9 30.0 1.0
CB F:UNK406 4.9 30.0 1.0

Iron binding site 10 out of 28 in 4uq8

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Iron binding site 10 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE4 F:SF4508 0.0 37.0 1.0
S3 F:SF4508 2.3 37.0 1.0
S1 F:SF4508 2.3 37.0 1.0
S2 F:SF4508 2.3 37.0 1.0
SG F:CYS359 2.3 30.0 1.0
FE2 F:SF4508 2.6 37.0 1.0
FE3 F:SF4508 2.7 37.0 1.0
FE1 F:SF4508 2.7 37.0 1.0
CB F:CYS359 3.4 30.0 1.0
N F:CYS359 3.5 30.0 1.0
N F:UNK360 3.7 30.0 1.0
S4 F:SF4508 3.9 37.0 1.0
CA F:CYS359 3.9 30.0 1.0
N F:UNK361 3.9 30.0 1.0
C F:CYS359 4.3 30.0 1.0
N F:CYS362 4.4 30.0 1.0
CB F:UNK361 4.5 30.0 1.0
CA F:UNK361 4.6 30.0 1.0
C F:UNK360 4.6 30.0 1.0
C F:UNK358 4.7 30.0 1.0
CA F:UNK360 4.7 30.0 1.0
SG F:CYS365 4.8 30.0 1.0
SG F:CYS405 4.8 30.0 1.0
SG F:CYS362 4.8 30.0 1.0
CA F:UNK358 4.9 30.0 1.0

Reference:

K.R.Vinothkumar, J.Zhu, J.Hirst. Architecture of Mammalian Respiratory Complex I. Nature V. 515 80 2014.
ISSN: ISSN 0028-0836
PubMed: 25209663
DOI: 10.1038/NATURE13686
Page generated: Mon Aug 5 13:34:13 2024

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