Atomistry » Iron » PDB 4uh1-4ur1 » 4uq8
Atomistry »
  Iron »
    PDB 4uh1-4ur1 »
      4uq8 »

Iron in PDB 4uq8: Electron Cryo-Microscopy of Bovine Complex I

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Electron Cryo-Microscopy of Bovine Complex I (pdb code 4uq8). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Electron Cryo-Microscopy of Bovine Complex I, PDB code: 4uq8:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 1 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE1 B:SF4201 0.0 30.0 1.0
SG B:CYS119 1.9 30.0 1.0
S3 B:SF4201 2.3 30.0 1.0
S4 B:SF4201 2.3 30.0 1.0
S2 B:SF4201 2.3 30.0 1.0
FE4 B:SF4201 2.6 30.0 1.0
FE2 B:SF4201 2.7 30.0 1.0
FE3 B:SF4201 2.8 30.0 1.0
CB B:CYS119 3.2 30.0 1.0
S1 B:SF4201 3.9 30.0 1.0
N B:CYS119 4.1 30.0 1.0
CA B:CYS119 4.2 30.0 1.0
CB B:UNK118 4.2 30.0 1.0
SG B:CYS149 4.6 30.0 1.0
CB B:UNK122 4.6 30.0 1.0
SG B:CYS55 4.8 30.0 1.0
SG B:CYS54 5.0 30.0 1.0

Iron binding site 2 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 2 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE2 B:SF4201 0.0 30.0 1.0
S1 B:SF4201 2.3 30.0 1.0
S4 B:SF4201 2.3 30.0 1.0
S3 B:SF4201 2.3 30.0 1.0
SG B:CYS55 2.3 30.0 1.0
FE1 B:SF4201 2.7 30.0 1.0
FE3 B:SF4201 2.7 30.0 1.0
FE4 B:SF4201 2.7 30.0 1.0
CB B:CYS55 3.4 30.0 1.0
N B:CYS55 3.6 30.0 1.0
CA B:CYS55 3.6 30.0 1.0
S2 B:SF4201 3.9 30.0 1.0
CA B:UNK150 4.1 30.0 1.0
CB B:UNK117 4.1 30.0 1.0
SG B:CYS119 4.2 30.0 1.0
CB B:UNK150 4.4 30.0 1.0
CB B:CYS119 4.6 30.0 1.0
C B:CYS54 4.7 30.0 1.0
SG B:CYS54 4.7 30.0 1.0
N B:UNK150 4.7 30.0 1.0
CA B:CYS149 4.8 30.0 1.0
SG B:CYS149 4.9 30.0 1.0

Iron binding site 3 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 3 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE3 B:SF4201 0.0 30.0 1.0
S2 B:SF4201 2.3 30.0 1.0
S4 B:SF4201 2.3 30.0 1.0
S1 B:SF4201 2.3 30.0 1.0
SG B:CYS54 2.3 30.0 1.0
FE2 B:SF4201 2.7 30.0 1.0
FE4 B:SF4201 2.7 30.0 1.0
FE1 B:SF4201 2.8 30.0 1.0
CB B:CYS54 3.4 30.0 1.0
N B:CYS55 3.9 30.0 1.0
N B:CYS54 3.9 30.0 1.0
S3 B:SF4201 3.9 30.0 1.0
CA B:CYS54 4.1 30.0 1.0
CB B:UNK53 4.3 30.0 1.0
SG B:CYS119 4.3 30.0 1.0
C B:CYS54 4.4 30.0 1.0
SG B:CYS55 4.7 30.0 1.0
SG B:CYS149 4.8 30.0 1.0
CA B:CYS55 4.8 30.0 1.0

Iron binding site 4 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 4 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:30.0
occ:1.00
 FE4 B:SF4201 0.0 30.0 1.0
SG B:CYS149 2.3 30.0 1.0
S1 B:SF4201 2.3 30.0 1.0
S2 B:SF4201 2.3 30.0 1.0
S3 B:SF4201 2.3 30.0 1.0
FE1 B:SF4201 2.6 30.0 1.0
FE3 B:SF4201 2.7 30.0 1.0
FE2 B:SF4201 2.7 30.0 1.0
CB B:CYS149 3.2 30.0 1.0
CA B:CYS149 3.5 30.0 1.0
C B:CYS149 3.7 30.0 1.0
S4 B:SF4201 3.9 30.0 1.0
N B:UNK150 3.9 30.0 1.0
CA B:UNK150 4.2 30.0 1.0
O B:CYS149 4.2 30.0 1.0
SG B:CYS119 4.5 30.0 1.0
CB B:UNK118 4.6 30.0 1.0
SG B:CYS54 4.8 30.0 1.0
N B:CYS149 4.8 30.0 1.0
SG B:CYS55 4.9 30.0 1.0

Iron binding site 5 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 5 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:37.5
occ:1.00
 FE1 E:FES201 0.0 37.5 1.0
S1 E:FES201 2.2 37.5 1.0
S2 E:FES201 2.2 37.5 1.0
SG E:CYS103 2.3 30.0 1.0
SG E:CYS108 2.3 30.0 1.0
FE2 E:FES201 3.1 37.5 1.0
CB E:CYS108 3.2 30.0 1.0
CB E:CYS103 3.3 30.0 1.0
N E:UNK145 3.9 30.0 1.0
N E:CYS108 4.0 30.0 1.0
CA E:CYS108 4.1 30.0 1.0
CA E:CYS144 4.3 30.0 1.0
CB E:UNK105 4.4 30.0 1.0
O E:UNK105 4.5 30.0 1.0
CA E:CYS103 4.6 30.0 1.0
C E:CYS144 4.7 30.0 1.0
SG E:CYS144 4.7 30.0 1.0
N E:UNK105 4.7 30.0 1.0
C E:CYS103 4.7 30.0 1.0
CB E:CYS144 4.8 30.0 1.0
O E:UNK147 4.8 30.0 1.0
O E:CYS103 4.9 30.0 1.0
CB E:UNK145 4.9 30.0 1.0
CA E:UNK105 4.9 30.0 1.0
SG E:CYS148 5.0 30.0 1.0
CA E:UNK145 5.0 30.0 1.0

Iron binding site 6 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 6 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Fe201

b:37.5
occ:1.00
 FE2 E:FES201 0.0 37.5 1.0
S1 E:FES201 2.2 37.5 1.0
S2 E:FES201 2.2 37.5 1.0
SG E:CYS144 2.3 30.0 1.0
SG E:CYS148 2.3 30.0 1.0
FE1 E:FES201 3.1 37.5 1.0
O F:UNK102 3.4 30.0 1.0
CB E:CYS144 3.5 30.0 1.0
C F:UNK102 3.7 30.0 1.0
CB E:CYS148 3.7 30.0 1.0
CA F:UNK102 3.8 30.0 1.0
CA E:CYS144 3.9 30.0 1.0
N E:UNK146 4.0 30.0 1.0
N E:UNK145 4.0 30.0 1.0
CA E:CYS148 4.2 30.0 1.0
N E:CYS148 4.2 30.0 1.0
C E:CYS144 4.3 30.0 1.0
CB F:UNK103 4.3 30.0 1.0
N E:UNK147 4.4 30.0 1.0
CB E:UNK107 4.4 30.0 1.0
CB F:UNK102 4.4 30.0 1.0
C E:UNK147 4.5 30.0 1.0
CA E:UNK146 4.5 30.0 1.0
N F:UNK103 4.5 30.0 1.0
SG E:CYS103 4.7 30.0 1.0
O E:UNK147 4.8 30.0 1.0
C E:UNK146 4.9 30.0 1.0
C E:UNK145 4.9 30.0 1.0
N F:UNK102 4.9 30.0 1.0
CA E:UNK145 5.0 30.0 1.0

Iron binding site 7 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 7 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE1 F:SF4508 0.0 37.0 1.0
S2 F:SF4508 2.3 37.0 1.0
S3 F:SF4508 2.3 37.0 1.0
SG F:CYS362 2.3 30.0 1.0
S4 F:SF4508 2.3 37.0 1.0
FE2 F:SF4508 2.7 37.0 1.0
FE4 F:SF4508 2.7 37.0 1.0
FE3 F:SF4508 2.8 37.0 1.0
CB F:CYS362 3.0 30.0 1.0
CB F:UNK404 3.5 30.0 1.0
N F:CYS362 3.6 30.0 1.0
CA F:CYS362 3.9 30.0 1.0
S1 F:SF4508 3.9 37.0 1.0
N F:CYS405 4.0 30.0 1.0
CB F:CYS365 4.1 30.0 1.0
N F:UNK404 4.1 30.0 1.0
CA F:UNK404 4.3 30.0 1.0
SG F:CYS365 4.5 30.0 1.0
CB F:UNK408 4.5 30.0 1.0
C F:UNK404 4.6 30.0 1.0
C F:UNK361 4.6 30.0 1.0
SG F:CYS359 4.8 30.0 1.0
SG F:CYS405 4.8 30.0 1.0
O F:CYS405 4.8 30.0 1.0
CA F:CYS405 4.9 30.0 1.0
C F:CYS362 4.9 30.0 1.0
N F:UNK361 4.9 30.0 1.0
O F:CYS362 5.0 30.0 1.0
CB F:UNK361 5.0 30.0 1.0

Iron binding site 8 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 8 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE2 F:SF4508 0.0 37.0 1.0
SG F:CYS365 2.3 30.0 1.0
S1 F:SF4508 2.3 37.0 1.0
S4 F:SF4508 2.3 37.0 1.0
S3 F:SF4508 2.3 37.0 1.0
FE4 F:SF4508 2.6 37.0 1.0
FE1 F:SF4508 2.7 37.0 1.0
FE3 F:SF4508 2.7 37.0 1.0
CB F:CYS365 3.0 30.0 1.0
CB F:UNK408 3.4 30.0 1.0
S2 F:SF4508 3.8 37.0 1.0
N F:CYS359 4.4 30.0 1.0
CA F:UNK358 4.4 30.0 1.0
CB F:UNK358 4.5 30.0 1.0
CA F:CYS365 4.5 30.0 1.0
CA F:UNK408 4.7 30.0 1.0
SG F:CYS362 4.7 30.0 1.0
CB F:CYS362 4.8 30.0 1.0
SG F:CYS359 4.8 30.0 1.0
SG F:CYS405 4.9 30.0 1.0
C F:UNK358 4.9 30.0 1.0
N F:UNK360 5.0 30.0 1.0

Iron binding site 9 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 9 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE3 F:SF4508 0.0 37.0 1.0
S4 F:SF4508 2.3 37.0 1.0
S2 F:SF4508 2.3 37.0 1.0
S1 F:SF4508 2.3 37.0 1.0
SG F:CYS405 2.3 30.0 1.0
FE2 F:SF4508 2.7 37.0 1.0
FE4 F:SF4508 2.7 37.0 1.0
FE1 F:SF4508 2.8 37.0 1.0
CB F:UNK408 3.1 30.0 1.0
CB F:CYS405 3.3 30.0 1.0
N F:UNK408 3.7 30.0 1.0
N F:CYS405 3.7 30.0 1.0
CA F:CYS405 3.8 30.0 1.0
O F:CYS405 4.0 30.0 1.0
S3 F:SF4508 4.0 37.0 1.0
CA F:UNK408 4.0 30.0 1.0
C F:CYS405 4.1 30.0 1.0
SG F:CYS359 4.7 30.0 1.0
SG F:CYS365 4.7 30.0 1.0
N F:UNK407 4.8 30.0 1.0
C F:UNK404 4.8 30.0 1.0
C F:UNK407 4.8 30.0 1.0
SG F:CYS362 4.9 30.0 1.0
CB F:UNK407 4.9 30.0 1.0
CB F:UNK404 4.9 30.0 1.0
CB F:UNK406 4.9 30.0 1.0

Iron binding site 10 out of 28 in 4uq8

Go back to Iron Binding Sites List in 4uq8
Iron binding site 10 out of 28 in the Electron Cryo-Microscopy of Bovine Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Electron Cryo-Microscopy of Bovine Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Fe508

b:37.0
occ:1.00
 FE4 F:SF4508 0.0 37.0 1.0
S3 F:SF4508 2.3 37.0 1.0
S1 F:SF4508 2.3 37.0 1.0
S2 F:SF4508 2.3 37.0 1.0
SG F:CYS359 2.3 30.0 1.0
FE2 F:SF4508 2.6 37.0 1.0
FE3 F:SF4508 2.7 37.0 1.0
FE1 F:SF4508 2.7 37.0 1.0
CB F:CYS359 3.4 30.0 1.0
N F:CYS359 3.5 30.0 1.0
N F:UNK360 3.7 30.0 1.0
S4 F:SF4508 3.9 37.0 1.0
CA F:CYS359 3.9 30.0 1.0
N F:UNK361 3.9 30.0 1.0
C F:CYS359 4.3 30.0 1.0
N F:CYS362 4.4 30.0 1.0
CB F:UNK361 4.5 30.0 1.0
CA F:UNK361 4.6 30.0 1.0
C F:UNK360 4.6 30.0 1.0
C F:UNK358 4.7 30.0 1.0
CA F:UNK360 4.7 30.0 1.0
SG F:CYS365 4.8 30.0 1.0
SG F:CYS405 4.8 30.0 1.0
SG F:CYS362 4.8 30.0 1.0
CA F:UNK358 4.9 30.0 1.0

Reference:

K.R.Vinothkumar, J.Zhu, J.Hirst. Architecture of Mammalian Respiratory Complex I. Nature V. 515 80 2014.
ISSN: ISSN 0028-0836
PubMed: 25209663
DOI: 10.1038/NATURE13686
Page generated: Mon Aug 5 13:34:13 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy