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Iron in PDB 4uzi: Crystal Structure of Aaudyp Complexed with Imidazole

Enzymatic activity of Crystal Structure of Aaudyp Complexed with Imidazole

All present enzymatic activity of Crystal Structure of Aaudyp Complexed with Imidazole:
1.11.1.19;

Protein crystallography data

The structure of Crystal Structure of Aaudyp Complexed with Imidazole, PDB code: 4uzi was solved by E.Strittmatter, C.Liers, R.Ullrich, M.Hofrichter, K.Piontek, D.A.Plattner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.51 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 67.330, 45.710, 140.470, 90.00, 91.61, 90.00
R / Rfree (%) 17.949 / 23.867

Other elements in 4uzi:

The structure of Crystal Structure of Aaudyp Complexed with Imidazole also contains other interesting chemical elements:

Potassium (K) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Aaudyp Complexed with Imidazole (pdb code 4uzi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Aaudyp Complexed with Imidazole, PDB code: 4uzi:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4uzi

Go back to Iron Binding Sites List in 4uzi
Iron binding site 1 out of 2 in the Crystal Structure of Aaudyp Complexed with Imidazole


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Aaudyp Complexed with Imidazole within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1449

b:13.3
occ:1.00
FE A:HEM1449 0.0 13.3 1.0
ND A:HEM1449 1.9 11.3 1.0
NA A:HEM1449 2.0 13.5 1.0
NE2 A:HIS304 2.1 10.0 1.0
N1 A:IMD1454 2.1 11.8 0.5
NC A:HEM1449 2.1 11.5 1.0
NB A:HEM1449 2.1 13.6 1.0
N1 A:IMD1454 2.1 12.2 0.5
C1D A:HEM1449 2.9 11.8 1.0
C4D A:HEM1449 2.9 12.4 1.0
C5 A:IMD1454 3.0 12.1 0.5
C5 A:IMD1454 3.0 13.0 0.5
C1A A:HEM1449 3.0 14.3 1.0
CD2 A:HIS304 3.0 10.1 1.0
C4A A:HEM1449 3.0 14.0 1.0
C4C A:HEM1449 3.1 12.6 1.0
C1B A:HEM1449 3.1 14.6 1.0
CE1 A:HIS304 3.1 9.3 1.0
C4B A:HEM1449 3.1 13.8 1.0
C1C A:HEM1449 3.1 12.6 1.0
C2 A:IMD1454 3.1 12.2 0.5
C2 A:IMD1454 3.2 13.8 0.5
CHA A:HEM1449 3.4 13.6 1.0
CHD A:HEM1449 3.4 12.4 1.0
CHB A:HEM1449 3.4 13.1 1.0
CHC A:HEM1449 3.5 12.4 1.0
ND1 A:HIS304 4.2 9.4 1.0
CG A:HIS304 4.2 8.8 1.0
C4 A:IMD1454 4.2 12.7 0.5
C2D A:HEM1449 4.2 12.4 1.0
C2A A:HEM1449 4.2 14.5 1.0
C3D A:HEM1449 4.2 12.2 1.0
C3A A:HEM1449 4.2 13.4 1.0
C4 A:IMD1454 4.2 12.1 0.5
N3 A:IMD1454 4.2 11.8 0.5
C3C A:HEM1449 4.3 11.9 1.0
C2B A:HEM1449 4.3 13.7 1.0
N3 A:IMD1454 4.3 12.4 0.5
C2C A:HEM1449 4.3 12.1 1.0
C3B A:HEM1449 4.3 14.2 1.0
NH1 A:ARG332 4.5 14.6 1.0

Iron binding site 2 out of 2 in 4uzi

Go back to Iron Binding Sites List in 4uzi
Iron binding site 2 out of 2 in the Crystal Structure of Aaudyp Complexed with Imidazole


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Aaudyp Complexed with Imidazole within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe1449

b:16.1
occ:1.00
FE B:HEM1449 0.0 16.1 1.0
ND B:HEM1449 1.9 13.8 1.0
NA B:HEM1449 2.0 15.1 1.0
NE2 B:HIS304 2.1 13.6 1.0
NC B:HEM1449 2.1 14.5 1.0
NB B:HEM1449 2.1 16.2 1.0
N1 B:IMD1455 2.2 15.0 0.5
N1 B:IMD1455 2.6 15.1 0.5
C4D B:HEM1449 2.9 14.6 1.0
C1D B:HEM1449 2.9 13.4 1.0
C1A B:HEM1449 3.0 16.3 1.0
CD2 B:HIS304 3.0 13.9 1.0
C4A B:HEM1449 3.0 15.1 1.0
C2 B:IMD1455 3.0 15.1 0.5
CE1 B:HIS304 3.1 15.5 1.0
C1B B:HEM1449 3.1 16.2 1.0
C4B B:HEM1449 3.1 16.1 1.0
C4C B:HEM1449 3.1 15.3 1.0
C1C B:HEM1449 3.1 15.2 1.0
C5 B:IMD1455 3.1 16.2 0.5
C5 B:IMD1455 3.2 14.7 0.5
CHA B:HEM1449 3.4 15.1 1.0
CHD B:HEM1449 3.4 14.5 1.0
CHB B:HEM1449 3.4 15.8 1.0
CHC B:HEM1449 3.5 15.2 1.0
C2 B:IMD1455 3.8 15.7 0.5
ND1 B:HIS304 4.2 15.9 1.0
CG B:HIS304 4.2 14.2 1.0
C2D B:HEM1449 4.2 13.3 1.0
C3D B:HEM1449 4.2 14.4 1.0
C2A B:HEM1449 4.2 16.8 1.0
C3A B:HEM1449 4.2 15.6 1.0
N3 B:IMD1455 4.2 15.7 0.5
C3C B:HEM1449 4.3 15.0 1.0
C2C B:HEM1449 4.3 15.5 1.0
C2B B:HEM1449 4.3 16.9 1.0
C4 B:IMD1455 4.3 15.3 0.5
C3B B:HEM1449 4.3 15.5 1.0
C4 B:IMD1455 4.4 16.4 0.5
NH1 B:ARG332 4.4 18.4 1.0
N3 B:IMD1455 4.7 15.9 0.5

Reference:

E.Strittmatter, K.Serrer, C.Liers, R.Ullrich, M.Hofrichter, K.Piontek, E.Schleicher, D.A.Plattner. The Toolbox of Auricularia Auricula-Judae Dye-Decolorizing Peroxidase - Identification of Three New Potential Substrate-Interaction Sites. Arch.Biochem.Biophys. 2014.
ISSN: ESSN 1096-0384
PubMed: 25542606
DOI: 10.1016/J.ABB.2014.12.016
Page generated: Sun Dec 13 15:50:16 2020

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