Iron in PDB 4xdi: Structure of Chlamydomonas Reinhardtii THB1
Protein crystallography data
The structure of Structure of Chlamydomonas Reinhardtii THB1, PDB code: 4xdi
was solved by
S.L.Rice,
L.E.Boucher,
J.L.Schlessman,
J.Bosch,
J.T.J.Lecomte,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.30 /
1.89
|
Space group
|
P 61 2 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
144.513,
144.513,
79.913,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
18.7 /
21.8
|
Iron Binding Sites:
The binding sites of Iron atom in the Structure of Chlamydomonas Reinhardtii THB1
(pdb code 4xdi). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Structure of Chlamydomonas Reinhardtii THB1, PDB code: 4xdi:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 4xdi
Go back to
Iron Binding Sites List in 4xdi
Iron binding site 1 out
of 2 in the Structure of Chlamydomonas Reinhardtii THB1
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Structure of Chlamydomonas Reinhardtii THB1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:34.9
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
34.9
|
1.0
|
NC
|
A:HEM201
|
2.0
|
27.6
|
1.0
|
NA
|
A:HEM201
|
2.0
|
30.6
|
1.0
|
NB
|
A:HEM201
|
2.0
|
33.0
|
1.0
|
ND
|
A:HEM201
|
2.1
|
35.9
|
1.0
|
NE2
|
A:HIS77
|
2.1
|
35.9
|
1.0
|
NZ
|
A:LYS53
|
2.2
|
31.8
|
1.0
|
C1C
|
A:HEM201
|
3.0
|
34.6
|
1.0
|
C4C
|
A:HEM201
|
3.0
|
32.6
|
1.0
|
C1D
|
A:HEM201
|
3.0
|
32.3
|
1.0
|
C4B
|
A:HEM201
|
3.0
|
32.4
|
1.0
|
C4A
|
A:HEM201
|
3.0
|
32.7
|
1.0
|
C1A
|
A:HEM201
|
3.1
|
35.0
|
1.0
|
C4D
|
A:HEM201
|
3.1
|
37.1
|
1.0
|
CE1
|
A:HIS77
|
3.1
|
34.2
|
1.0
|
C1B
|
A:HEM201
|
3.1
|
32.7
|
1.0
|
CD2
|
A:HIS77
|
3.1
|
34.5
|
1.0
|
CE
|
A:LYS53
|
3.2
|
32.9
|
1.0
|
CHD
|
A:HEM201
|
3.4
|
34.4
|
1.0
|
CHC
|
A:HEM201
|
3.4
|
29.7
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
33.3
|
1.0
|
CHB
|
A:HEM201
|
3.4
|
31.9
|
1.0
|
CD
|
A:LYS53
|
3.8
|
35.4
|
1.0
|
ND1
|
A:HIS77
|
4.2
|
35.2
|
1.0
|
C2C
|
A:HEM201
|
4.2
|
30.8
|
1.0
|
C3C
|
A:HEM201
|
4.2
|
30.4
|
1.0
|
CG
|
A:HIS77
|
4.2
|
34.5
|
1.0
|
C3A
|
A:HEM201
|
4.2
|
37.2
|
1.0
|
C2A
|
A:HEM201
|
4.3
|
35.3
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
30.4
|
1.0
|
C2D
|
A:HEM201
|
4.3
|
33.4
|
1.0
|
C3D
|
A:HEM201
|
4.3
|
33.7
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
35.5
|
1.0
|
CG
|
A:LYS53
|
4.4
|
34.8
|
1.0
|
CZ
|
A:PHE57
|
5.0
|
36.0
|
1.0
|
|
Iron binding site 2 out
of 2 in 4xdi
Go back to
Iron Binding Sites List in 4xdi
Iron binding site 2 out
of 2 in the Structure of Chlamydomonas Reinhardtii THB1
 Mono view
 Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Structure of Chlamydomonas Reinhardtii THB1 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:41.1
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
41.1
|
1.0
|
NC
|
B:HEM201
|
2.0
|
33.9
|
1.0
|
NA
|
B:HEM201
|
2.0
|
39.7
|
1.0
|
ND
|
B:HEM201
|
2.1
|
45.5
|
1.0
|
NB
|
B:HEM201
|
2.1
|
34.2
|
1.0
|
NE2
|
B:HIS77
|
2.2
|
41.0
|
1.0
|
NZ
|
B:LYS53
|
2.2
|
37.2
|
1.0
|
C1C
|
B:HEM201
|
3.0
|
40.5
|
1.0
|
C1A
|
B:HEM201
|
3.1
|
44.3
|
1.0
|
C4C
|
B:HEM201
|
3.1
|
37.4
|
1.0
|
C4B
|
B:HEM201
|
3.1
|
37.2
|
1.0
|
C1D
|
B:HEM201
|
3.1
|
43.9
|
1.0
|
C4D
|
B:HEM201
|
3.1
|
41.3
|
1.0
|
C4A
|
B:HEM201
|
3.1
|
43.6
|
1.0
|
C1B
|
B:HEM201
|
3.1
|
38.9
|
1.0
|
CD2
|
B:HIS77
|
3.1
|
40.3
|
1.0
|
CE1
|
B:HIS77
|
3.1
|
39.9
|
1.0
|
CE
|
B:LYS53
|
3.2
|
37.4
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
32.8
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
42.3
|
1.0
|
CHA
|
B:HEM201
|
3.4
|
40.5
|
1.0
|
CHB
|
B:HEM201
|
3.5
|
42.0
|
1.0
|
CD
|
B:LYS53
|
3.9
|
41.4
|
1.0
|
C2C
|
B:HEM201
|
4.2
|
36.6
|
1.0
|
ND1
|
B:HIS77
|
4.2
|
40.9
|
1.0
|
C3C
|
B:HEM201
|
4.3
|
37.3
|
1.0
|
C2A
|
B:HEM201
|
4.3
|
45.8
|
1.0
|
CG
|
B:HIS77
|
4.3
|
41.5
|
1.0
|
C3A
|
B:HEM201
|
4.3
|
44.2
|
1.0
|
C2D
|
B:HEM201
|
4.3
|
45.7
|
1.0
|
C3B
|
B:HEM201
|
4.3
|
36.2
|
1.0
|
C3D
|
B:HEM201
|
4.3
|
45.3
|
1.0
|
C2B
|
B:HEM201
|
4.3
|
37.9
|
1.0
|
CG
|
B:LYS53
|
4.4
|
41.9
|
1.0
|
CZ
|
B:PHE57
|
4.9
|
50.3
|
1.0
|
|
Reference:
S.L.Rice,
L.E.Boucher,
J.L.Schlessman,
J.Bosch,
J.T.J.Lecomte.
Structure of Chlamydomonas Reinhardtii THB1 To Be Published.
Page generated: Mon Aug 5 15:27:25 2024
|