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Iron in PDB 4xxl: Crystal Structure of Class 1 Cytochrome Mtod From Sideroxydans Lithotrophicus Es-1

Protein crystallography data

The structure of Crystal Structure of Class 1 Cytochrome Mtod From Sideroxydans Lithotrophicus Es-1, PDB code: 4xxl was solved by C.R.Beckwith, M.J.Edwards, T.Clarke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.09 / 1.47
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 92.180, 40.200, 29.700, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Class 1 Cytochrome Mtod From Sideroxydans Lithotrophicus Es-1 (pdb code 4xxl). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Class 1 Cytochrome Mtod From Sideroxydans Lithotrophicus Es-1, PDB code: 4xxl:

Iron binding site 1 out of 1 in 4xxl

Go back to Iron Binding Sites List in 4xxl
Iron binding site 1 out of 1 in the Crystal Structure of Class 1 Cytochrome Mtod From Sideroxydans Lithotrophicus Es-1


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Class 1 Cytochrome Mtod From Sideroxydans Lithotrophicus Es-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:9.9
occ:1.00
FE A:HEM201 0.0 9.9 1.0
ND A:HEM201 1.9 8.7 1.0
NE2 A:HIS95 2.0 9.6 1.0
NE2 A:HIS47 2.0 9.9 1.0
NB A:HEM201 2.0 8.8 1.0
NA A:HEM201 2.1 10.9 1.0
NC A:HEM201 2.1 10.4 1.0
CE1 A:HIS47 2.9 10.6 1.0
C1D A:HEM201 3.0 10.4 1.0
CD2 A:HIS95 3.0 8.7 1.0
CE1 A:HIS95 3.0 9.8 1.0
C4A A:HEM201 3.0 9.9 1.0
C4D A:HEM201 3.0 10.6 1.0
CD2 A:HIS47 3.0 10.2 1.0
C1C A:HEM201 3.0 9.9 1.0
C4C A:HEM201 3.0 11.0 1.0
C1B A:HEM201 3.0 9.8 1.0
C1A A:HEM201 3.1 11.2 1.0
C4B A:HEM201 3.1 9.6 1.0
CHD A:HEM201 3.4 11.1 1.0
CHB A:HEM201 3.5 10.9 1.0
CHC A:HEM201 3.5 9.8 1.0
CHA A:HEM201 3.5 10.7 1.0
ND1 A:HIS47 4.1 11.1 1.0
ND1 A:HIS95 4.1 11.1 1.0
CG A:HIS95 4.1 9.6 1.0
CG A:HIS47 4.1 10.5 1.0
C2C A:HEM201 4.2 10.3 1.0
C3A A:HEM201 4.2 10.7 1.0
C2A A:HEM201 4.2 10.1 1.0
C3D A:HEM201 4.3 11.8 1.0
C2B A:HEM201 4.3 9.9 1.0
C3C A:HEM201 4.3 11.0 1.0
C2D A:HEM201 4.3 11.3 1.0
C3B A:HEM201 4.3 10.7 1.0
CE1 A:HIS78 4.5 16.1 1.0
O A:HOH422 4.9 16.0 1.0

Reference:

C.R.Beckwith, M.J.Edwards, M.Lawes, L.Shi, J.N.Butt, D.J.Richardson, T.A.Clarke. Characterization of Mtod From Sideroxydans Lithotrophicus: A Cytochrome C Electron Shuttle Used in Lithoautotrophic Growth. Front Microbiol V. 6 332 2015.
ISSN: ESSN 1664-302X
PubMed: 25972843
DOI: 10.3389/FMICB.2015.00332
Page generated: Sun Dec 13 15:52:31 2020

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