Atomistry » Iron » PDB 4xry-4yoq » 4ydd
Atomistry »
  Iron »
    PDB 4xry-4yoq »
      4ydd »

Iron in PDB 4ydd: Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps

Protein crystallography data

The structure of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps, PDB code: 4ydd was solved by C.-L.Tsai, M.D.Youngblut, J.A.Tainer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.35 / 1.86
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 132.827, 175.501, 193.160, 90.00, 90.00, 90.00
R / Rfree (%) 20.1 / 23.7

Other elements in 4ydd:

The structure of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps also contains other interesting chemical elements:

Molybdenum (Mo) 3 atoms
Sodium (Na) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 57;

Binding sites:

The binding sites of Iron atom in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps (pdb code 4ydd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 57 binding sites of Iron where determined in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps, PDB code: 4ydd:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 1 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:13.7
occ:1.00
FE1 A:SF41001 0.0 13.7 1.0
S2 A:SF41001 2.2 17.1 1.0
SG A:CYS74 2.2 15.0 1.0
S3 A:SF41001 2.2 14.1 1.0
S4 A:SF41001 2.2 19.2 1.0
FE3 A:SF41001 2.7 13.7 1.0
FE2 A:SF41001 2.7 13.7 1.0
FE4 A:SF41001 2.8 14.6 1.0
H A:GLY77 3.2 18.1 1.0
HB3 A:CYS74 3.3 16.5 1.0
CB A:CYS74 3.4 13.7 1.0
HA3 A:GLY77 3.5 17.4 1.0
H A:CYS74 3.7 18.2 1.0
N A:CYS74 3.8 15.2 1.0
N A:GLY77 3.8 15.1 1.0
S1 A:SF41001 3.9 14.0 1.0
HB2 A:LYS76 3.9 17.9 1.0
HE2 A:LYS76 4.0 17.7 1.0
CA A:CYS74 4.1 14.8 1.0
CA A:GLY77 4.1 14.5 1.0
O A:HOH1591 4.1 15.2 1.0
HB2 A:CYS74 4.2 16.5 1.0
HA2 A:GLY77 4.3 17.4 1.0
C A:GLY73 4.3 14.9 1.0
HA2 A:GLY73 4.4 17.3 1.0
C A:CYS74 4.5 14.4 1.0
ND1 A:HIS32 4.6 15.5 1.0
H A:LYS76 4.6 17.5 1.0
O A:CYS74 4.7 15.5 1.0
O A:GLY73 4.8 14.4 1.0
HB2 A:CYS36 4.8 19.1 1.0
HG21 A:VAL769 4.8 18.1 1.0
CB A:LYS76 4.8 14.9 1.0
C A:LYS76 4.9 15.3 1.0
CA A:GLY73 4.9 14.4 1.0
SG A:CYS40 4.9 13.3 1.0
HG3 A:PRO210 4.9 18.4 1.0
CE A:LYS76 4.9 14.7 1.0
SG A:CYS36 4.9 14.7 1.0
HA A:CYS74 4.9 17.7 1.0
HA3 A:GLY38 5.0 19.7 1.0

Iron binding site 2 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 2 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:13.7
occ:1.00
FE2 A:SF41001 0.0 13.7 1.0
S3 A:SF41001 2.2 14.1 1.0
S4 A:SF41001 2.2 19.2 1.0
S1 A:SF41001 2.2 14.0 1.0
SG A:CYS36 2.3 14.7 1.0
FE4 A:SF41001 2.7 14.6 1.0
FE3 A:SF41001 2.7 13.7 1.0
FE1 A:SF41001 2.7 13.7 1.0
HB2 A:CYS36 3.2 19.1 1.0
CB A:CYS36 3.2 15.9 1.0
HB3 A:CYS36 3.4 19.1 1.0
HA3 A:GLY38 3.4 19.7 1.0
H A:GLY38 3.7 20.5 1.0
S2 A:SF41001 3.7 17.1 1.0
HG23 A:VAL34 3.8 20.0 1.0
HB2 A:HIS32 4.0 20.4 1.0
CA A:GLY38 4.2 16.4 1.0
HG21 A:VAL769 4.3 18.1 1.0
O A:HOH1609 4.3 17.1 1.0
N A:GLY38 4.3 17.1 1.0
H A:ALA39 4.3 20.8 1.0
CG2 A:VAL34 4.4 16.6 1.0
HG22 A:VAL34 4.5 20.0 1.0
HG21 A:VAL34 4.5 20.0 1.0
CA A:CYS36 4.6 15.1 1.0
H A:CYS40 4.7 19.7 1.0
SG A:CYS74 4.7 15.0 1.0
SG A:CYS40 4.8 13.3 1.0
N A:ALA39 4.8 17.3 1.0
H A:CYS36 4.8 19.1 1.0
ND1 A:HIS32 4.8 15.5 1.0
CB A:HIS32 4.8 17.0 1.0
HG22 A:VAL769 4.9 18.1 1.0
HB2 A:CYS40 4.9 18.7 1.0
HA2 A:GLY38 4.9 19.7 1.0
C A:GLY38 4.9 16.5 1.0
O A:HOH1591 5.0 15.2 1.0
HB3 A:HIS32 5.0 20.4 1.0
HG3 A:PRO210 5.0 18.4 1.0

Iron binding site 3 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 3 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:13.7
occ:1.00
FE3 A:SF41001 0.0 13.7 1.0
S2 A:SF41001 2.2 17.1 1.0
S1 A:SF41001 2.2 14.0 1.0
ND1 A:HIS32 2.2 15.5 1.0
S4 A:SF41001 2.2 19.2 1.0
FE4 A:SF41001 2.6 14.6 1.0
FE1 A:SF41001 2.7 13.7 1.0
FE2 A:SF41001 2.7 13.7 1.0
HB2 A:HIS32 2.7 20.4 1.0
CG A:HIS32 3.1 17.2 1.0
CE1 A:HIS32 3.2 16.9 1.0
HA3 A:GLY77 3.3 17.4 1.0
CB A:HIS32 3.4 17.0 1.0
HE1 A:HIS32 3.4 20.3 1.0
HA2 A:GLY77 3.7 17.4 1.0
S3 A:SF41001 3.7 14.1 1.0
HB2 A:CYS40 3.8 18.7 1.0
HB3 A:HIS32 3.8 20.4 1.0
HE1 A:HIS42 3.9 18.6 1.0
CA A:GLY77 4.0 14.5 1.0
O A:HOH1469 4.2 18.0 1.0
CD2 A:HIS32 4.3 17.1 1.0
NE2 A:HIS32 4.3 16.7 1.0
H A:HIS32 4.3 22.5 1.0
CE1 A:HIS42 4.4 15.5 1.0
H A:CYS40 4.4 19.7 1.0
H A:GLY77 4.4 18.1 1.0
N A:GLY77 4.6 15.1 1.0
CB A:CYS40 4.6 15.6 1.0
CA A:HIS32 4.6 18.2 1.0
HA2 A:GLY73 4.7 17.3 1.0
SG A:CYS40 4.8 13.3 1.0
SG A:CYS74 4.8 15.0 1.0
N A:HIS32 4.8 18.7 1.0
SG A:CYS36 4.8 14.7 1.0
HG22 A:VAL34 4.9 20.0 1.0
HD1 A:HIS42 4.9 19.5 1.0
ND1 A:HIS42 4.9 16.2 1.0

Iron binding site 4 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 4 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1001

b:14.6
occ:1.00
FE4 A:SF41001 0.0 14.6 1.0
S2 A:SF41001 2.2 17.1 1.0
S1 A:SF41001 2.2 14.0 1.0
S3 A:SF41001 2.2 14.1 1.0
SG A:CYS40 2.4 13.3 1.0
HB2 A:CYS40 2.6 18.7 1.0
FE3 A:SF41001 2.6 13.7 1.0
FE2 A:SF41001 2.7 13.7 1.0
FE1 A:SF41001 2.8 13.7 1.0
CB A:CYS40 3.0 15.6 1.0
HA3 A:GLY38 3.1 19.7 1.0
H A:CYS40 3.4 19.7 1.0
HA2 A:GLY73 3.6 17.3 1.0
HB3 A:CYS40 3.7 18.7 1.0
HG3 A:PRO210 3.7 18.4 1.0
S4 A:SF41001 3.7 19.2 1.0
HE1 A:HIS42 3.8 18.6 1.0
H A:GLY73 3.9 17.6 1.0
CA A:GLY38 4.0 16.4 1.0
N A:CYS40 4.0 16.4 1.0
CA A:CYS40 4.1 15.1 1.0
CA A:GLY73 4.2 14.4 1.0
C A:GLY38 4.4 16.5 1.0
C A:GLY73 4.4 14.9 1.0
HA2 A:GLY38 4.4 19.7 1.0
N A:GLY73 4.5 14.6 1.0
SG A:CYS36 4.6 14.7 1.0
H A:ALA39 4.6 20.8 1.0
N A:ALA39 4.6 17.3 1.0
HB3 A:CYS74 4.6 16.5 1.0
ND1 A:HIS32 4.6 15.5 1.0
H A:CYS74 4.6 18.2 1.0
HB3 A:PRO210 4.6 16.3 1.0
CG A:PRO210 4.6 15.3 1.0
N A:CYS74 4.7 15.2 1.0
CE1 A:HIS42 4.7 15.5 1.0
H A:GLY38 4.7 20.5 1.0
HA A:CYS40 4.7 18.1 1.0
SG A:CYS74 4.8 15.0 1.0
O A:GLY73 4.8 14.4 1.0
O A:HOH1469 4.8 18.0 1.0
HA3 A:GLY77 4.9 17.4 1.0
HB3 A:ARG72 4.9 17.2 1.0
N A:GLY38 4.9 17.1 1.0
HB2 A:HIS32 4.9 20.4 1.0
HD3 A:PRO210 4.9 16.4 1.0
O A:GLY38 4.9 15.8 1.0

Iron binding site 5 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 5 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:20.7
occ:1.00
FE1 B:F3S401 0.0 20.7 1.0
S2 B:F3S401 2.2 23.0 1.0
S1 B:F3S401 2.3 21.2 1.0
S3 B:F3S401 2.3 19.1 1.0
SG B:CYS170 2.3 22.4 1.0
FE3 B:F3S401 2.6 20.5 1.0
FE4 B:F3S401 2.7 20.0 1.0
H B:GLY172 2.8 30.6 1.0
HB2 B:CYS170 3.3 26.2 1.0
CB B:CYS170 3.3 21.9 1.0
H B:ALA173 3.3 24.5 1.0
H B:LYS171 3.3 29.9 1.0
HA B:CYS170 3.4 28.2 1.0
H B:ALA194 3.6 25.2 1.0
N B:GLY172 3.6 25.5 1.0
HA2 B:GLY172 3.8 27.4 1.0
CA B:CYS170 3.8 23.5 1.0
S4 B:F3S401 3.8 22.1 1.0
HB3 B:ALA194 3.8 23.4 1.0
N B:LYS171 3.9 24.9 1.0
H B:GLN174 4.0 26.4 1.0
N B:ALA173 4.0 20.4 1.0
HB3 B:ALA153 4.1 27.1 1.0
HB2 B:ALA194 4.1 23.4 1.0
CA B:GLY172 4.2 22.8 1.0
HB3 B:CYS170 4.2 26.2 1.0
C B:CYS170 4.3 24.7 1.0
CB B:ALA194 4.4 19.5 1.0
N B:ALA194 4.5 21.0 1.0
HA B:LYS193 4.5 27.4 1.0
HG21 B:ILE165 4.5 23.1 1.0
HG23 B:ILE165 4.5 23.1 1.0
HB3 B:ALA173 4.5 23.2 1.0
C B:GLY172 4.6 22.8 1.0
C B:LYS171 4.7 26.9 1.0
HD22 B:ASN151 4.7 32.1 1.0
CB B:ALA153 4.8 22.5 1.0
HB2 B:ALA153 4.8 27.1 1.0
HB1 B:ALA153 4.8 27.1 1.0
N B:GLN174 4.8 22.0 1.0
SG B:CYS149 4.8 23.8 1.0
SG B:CYS176 4.9 18.1 1.0
CG2 B:ILE165 4.9 19.2 1.0
CA B:LYS171 4.9 27.2 1.0

Iron binding site 6 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 6 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:20.5
occ:1.00
FE3 B:F3S401 0.0 20.5 1.0
S3 B:F3S401 2.2 19.1 1.0
S4 B:F3S401 2.2 22.1 1.0
S1 B:F3S401 2.2 21.2 1.0
SG B:CYS149 2.5 23.8 1.0
FE1 B:F3S401 2.6 20.7 1.0
FE4 B:F3S401 2.6 20.0 1.0
HB2 B:CYS149 3.2 28.1 1.0
CB B:CYS149 3.4 23.4 1.0
HB3 B:ALA153 3.4 27.1 1.0
HD2 B:PRO150 3.4 30.5 1.0
HA B:CYS149 3.5 28.8 1.0
HB3 B:ALA173 3.6 23.2 1.0
S2 B:F3S401 3.8 23.0 1.0
HD22 B:ASN151 3.9 32.1 1.0
H B:ALA173 4.0 24.5 1.0
CA B:CYS149 4.0 24.0 1.0
HB2 B:ASN151 4.1 30.8 1.0
H B:ASN151 4.1 31.6 1.0
HG13 B:ILE154 4.2 25.9 1.0
HA B:CYS170 4.2 28.2 1.0
HB3 B:CYS149 4.2 28.1 1.0
CB B:ALA153 4.3 22.5 1.0
H B:ALA153 4.3 28.0 1.0
HB2 B:ALA153 4.3 27.1 1.0
CD B:PRO150 4.4 25.4 1.0
H B:LYS171 4.4 29.9 1.0
H B:GLN174 4.4 26.4 1.0
HB3 B:CYS176 4.5 22.5 1.0
CB B:ALA173 4.5 19.3 1.0
H B:CYS176 4.5 24.6 1.0
HD11 B:ILE154 4.6 26.1 1.0
HB2 B:ALA173 4.6 23.2 1.0
H B:GLY172 4.7 30.6 1.0
ND2 B:ASN151 4.7 26.7 1.0
C B:CYS149 4.7 25.2 1.0
SG B:CYS170 4.7 22.4 1.0
N B:ALA173 4.7 20.4 1.0
HB2 B:CYS170 4.8 26.2 1.0
HB1 B:ALA153 4.8 27.1 1.0
HD3 B:PRO150 4.8 30.5 1.0
N B:PRO150 4.8 26.7 1.0
H B:ALA175 4.8 26.1 1.0
HB3 B:ALA175 4.9 27.1 1.0
SG B:CYS176 4.9 18.1 1.0
HD12 B:ILE154 4.9 26.1 1.0
N B:ASN151 4.9 26.3 1.0
CB B:ASN151 5.0 25.6 1.0

Iron binding site 7 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 7 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:20.0
occ:1.00
FE4 B:F3S401 0.0 20.0 1.0
S3 B:F3S401 2.2 19.1 1.0
S2 B:F3S401 2.2 23.0 1.0
S4 B:F3S401 2.2 22.1 1.0
SG B:CYS176 2.4 18.1 1.0
FE3 B:F3S401 2.6 20.5 1.0
FE1 B:F3S401 2.7 20.7 1.0
H B:CYS176 3.1 24.6 1.0
HB3 B:CYS176 3.1 22.5 1.0
H B:GLN174 3.3 26.4 1.0
CB B:CYS176 3.3 18.7 1.0
HB2 B:ALA194 3.5 23.4 1.0
HA B:GLN174 3.7 25.5 1.0
HB3 B:ALA194 3.7 23.4 1.0
HD11 B:ILE154 3.8 26.1 1.0
N B:CYS176 3.8 20.5 1.0
S1 B:F3S401 4.0 21.2 1.0
N B:GLN174 4.0 22.0 1.0
CB B:ALA194 4.0 19.5 1.0
HB2 B:CYS176 4.1 22.5 1.0
H B:ALA175 4.1 26.1 1.0
CA B:GLN174 4.2 21.3 1.0
CA B:CYS176 4.2 19.7 1.0
H B:ALA173 4.3 24.5 1.0
H B:VAL177 4.3 22.5 1.0
HB2 B:CYS149 4.4 28.1 1.0
HB3 B:ALA173 4.4 23.2 1.0
N B:ALA175 4.4 21.8 1.0
HB1 B:ALA194 4.4 23.4 1.0
C B:GLN174 4.6 22.2 1.0
CD1 B:ILE154 4.6 21.7 1.0
HD12 B:ILE154 4.6 26.1 1.0
HG23 B:VAL177 4.7 22.7 1.0
HD13 B:ILE165 4.7 21.0 1.0
SG B:CYS170 4.7 22.4 1.0
H B:ALA194 4.7 25.2 1.0
HA B:CYS149 4.8 28.8 1.0
HG13 B:ILE154 4.8 25.9 1.0
SG B:CYS149 4.8 23.8 1.0
N B:ALA173 4.8 20.4 1.0
HB3 B:ALA175 4.9 27.1 1.0
HA B:CYS176 4.9 23.7 1.0
C B:ALA175 5.0 21.1 1.0
N B:VAL177 5.0 18.8 1.0
CB B:CYS149 5.0 23.4 1.0

Iron binding site 8 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 8 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe402

b:16.7
occ:1.00
FE1 B:SF4402 0.0 16.7 1.0
S2 B:SF4402 2.2 18.9 1.0
S4 B:SF4402 2.2 19.4 1.0
S3 B:SF4402 2.2 20.2 1.0
SG B:CYS180 2.3 17.3 1.0
FE2 B:SF4402 2.7 16.9 1.0
FE4 B:SF4402 2.7 15.8 1.0
FE3 B:SF4402 2.8 16.7 1.0
HB2 B:CYS180 3.0 22.9 1.0
CB B:CYS180 3.2 19.1 1.0
HD2 B:TYR182 3.5 21.7 1.0
HD3 B:PRO185 3.6 20.0 1.0
HB2 B:LYS184 3.7 18.9 1.0
HA B:CYS180 3.7 22.7 1.0
HB2 B:TYR182 3.7 20.2 1.0
S1 B:SF4402 3.7 17.7 1.0
HD2 B:PRO181 3.8 23.7 1.0
HB3 B:CYS180 4.0 22.9 1.0
CA B:CYS180 4.1 18.9 1.0
HB3 B:CYS145 4.1 24.2 1.0
H B:TYR182 4.1 22.0 1.0
H B:LYS184 4.2 19.2 1.0
CD2 B:TYR182 4.3 18.1 1.0
H B:CYS145 4.5 26.9 1.0
CD B:PRO185 4.6 16.7 1.0
CB B:LYS184 4.6 15.8 1.0
HG3 B:PRO185 4.6 20.7 1.0
CB B:TYR182 4.6 16.8 1.0
H B:ASN138 4.6 18.5 1.0
SG B:CYS145 4.7 18.1 1.0
CD B:PRO181 4.7 19.7 1.0
C B:CYS180 4.8 19.8 1.0
HD22 B:ASN138 4.8 19.1 1.0
CB B:CYS145 4.9 20.1 1.0
HB3 B:LYS184 4.9 18.9 1.0
HA B:CYS137 4.9 18.5 1.0
SG B:CYS137 4.9 17.0 1.0
N B:LYS184 4.9 16.0 1.0
SG B:CYS140 5.0 17.4 1.0
N B:TYR182 5.0 18.4 1.0
CG B:TYR182 5.0 18.0 1.0
HD2 B:PRO185 5.0 20.0 1.0

Iron binding site 9 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 9 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe402

b:16.9
occ:1.00
FE2 B:SF4402 0.0 16.9 1.0
S1 B:SF4402 2.2 17.7 1.0
S4 B:SF4402 2.2 19.4 1.0
S3 B:SF4402 2.2 20.2 1.0
SG B:CYS145 2.3 18.1 1.0
FE1 B:SF4402 2.7 16.7 1.0
FE4 B:SF4402 2.7 15.8 1.0
FE3 B:SF4402 2.8 16.7 1.0
HB3 B:CYS145 3.0 24.2 1.0
H B:CYS145 3.1 26.9 1.0
CB B:CYS145 3.3 20.1 1.0
S2 B:SF4402 3.7 18.9 1.0
HG11 B:VAL163 3.9 23.2 1.0
HB3 B:PRO143 3.9 25.4 1.0
N B:CYS145 3.9 22.4 1.0
HB2 B:PRO143 3.9 25.4 1.0
HE2 B:LYS196 3.9 20.8 1.0
HB2 B:CYS145 4.0 24.2 1.0
HA B:PRO143 4.0 25.5 1.0
HB2 B:CYS180 4.0 22.9 1.0
CA B:CYS145 4.2 20.1 1.0
CB B:PRO143 4.3 21.1 1.0
H B:ALA144 4.4 25.3 1.0
H B:LEU146 4.5 24.6 1.0
CA B:PRO143 4.5 21.2 1.0
SG B:CYS137 4.6 17.0 1.0
N B:ALA144 4.7 21.1 1.0
SG B:CYS180 4.7 17.3 1.0
HG3 B:PRO185 4.7 20.7 1.0
HB2 B:CYS140 4.8 23.4 1.0
CB B:CYS180 4.8 19.1 1.0
C B:PRO143 4.8 22.3 1.0
CG1 B:VAL163 4.8 19.3 1.0
H B:CYS140 4.8 21.4 1.0
CE B:LYS196 4.9 17.3 1.0
HA B:CYS145 4.9 24.1 1.0
HA B:CYS180 5.0 22.7 1.0
HG21 B:VAL163 5.0 23.5 1.0
HG12 B:VAL163 5.0 23.2 1.0
HD3 B:PRO185 5.0 20.0 1.0

Iron binding site 10 out of 57 in 4ydd

Go back to Iron Binding Sites List in 4ydd
Iron binding site 10 out of 57 in the Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Crystal Structure of the Perchlorate Reductase Pcrab From Azospira Suillum Ps within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe402

b:16.7
occ:1.00
FE3 B:SF4402 0.0 16.7 1.0
S4 B:SF4402 2.2 19.4 1.0
S1 B:SF4402 2.2 17.7 1.0
S2 B:SF4402 2.3 18.9 1.0
SG B:CYS140 2.4 17.4 1.0
FE1 B:SF4402 2.8 16.7 1.0
FE2 B:SF4402 2.8 16.9 1.0
FE4 B:SF4402 2.8 15.8 1.0
HB2 B:CYS140 3.2 23.4 1.0
H B:CYS140 3.2 21.4 1.0
CB B:CYS140 3.4 19.5 1.0
HA B:PRO143 3.6 25.5 1.0
HB2 B:ASN138 3.7 19.9 1.0
S3 B:SF4402 3.9 20.2 1.0
H B:ASN138 3.9 18.5 1.0
HG1 B:THR252 4.0 25.2 1.0
HD2 B:TYR182 4.0 21.7 1.0
N B:CYS140 4.0 17.9 1.0
HB3 B:CYS140 4.1 23.4 1.0
HB B:THR252 4.1 25.2 1.0
HB3 B:PRO143 4.2 25.4 1.0
H B:HIS139 4.3 20.6 1.0
H B:ALA144 4.3 25.3 1.0
CA B:CYS140 4.4 18.2 1.0
HD22 B:ASN138 4.4 19.1 1.0
HE2 B:TYR182 4.5 21.9 1.0
N B:HIS139 4.5 17.2 1.0
HG21 B:THR252 4.5 26.0 1.0
CA B:PRO143 4.5 21.2 1.0
OG1 B:THR252 4.6 21.0 1.0
SG B:CYS137 4.6 17.0 1.0
CD2 B:TYR182 4.6 18.1 1.0
CB B:ASN138 4.6 16.6 1.0
N B:ASN138 4.7 15.4 1.0
HD2 B:PRO181 4.7 23.7 1.0
H B:CYS145 4.7 26.9 1.0
CB B:THR252 4.8 21.0 1.0
CB B:PRO143 4.8 21.1 1.0
HA B:CYS140 4.8 21.9 1.0
HA B:HIS139 4.9 19.7 1.0
CE2 B:TYR182 4.9 18.3 1.0
C B:ASN138 4.9 16.6 1.0
SG B:CYS145 4.9 18.1 1.0
SG B:CYS180 4.9 17.3 1.0
N B:ALA144 5.0 21.1 1.0
CA B:ASN138 5.0 16.6 1.0

Reference:

M.D.Youngblut, C.L.Tsai, I.C.Clark, H.K.Carlson, A.P.Maglaqui, P.S.Gau-Pan, S.A.Redford, A.Wong, J.A.Tainer, J.D.Coates. Perchlorate Reductase Is Distinguished By Active Site Aromatic Gate Residues. J.Biol.Chem. V. 291 9190 2016.
ISSN: ESSN 1083-351X
PubMed: 26940877
DOI: 10.1074/JBC.M116.714618
Page generated: Mon Aug 5 16:09:41 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy