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Iron in PDB 4yet: X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad

Enzymatic activity of X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad

All present enzymatic activity of X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad:
1.15.1.1;

Protein crystallography data

The structure of X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad, PDB code: 4yet was solved by J.W.Fairman, M.C.Clifton, J.Abendroth, T.E.Edwards, D.Lorimer, Seattlestructural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.15 / 1.75
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 55.750, 69.090, 114.810, 90.00, 90.00, 90.00
R / Rfree (%) 14.3 / 17.6

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad (pdb code 4yet). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad, PDB code: 4yet:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 4yet

Go back to Iron Binding Sites List in 4yet
Iron binding site 1 out of 2 in the X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe300

b:9.9
occ:0.90
OD2 A:ASP158 2.0 12.6 1.0
NE2 A:HIS162 2.1 9.3 1.0
NE2 A:HIS74 2.2 9.2 1.0
NE2 A:HIS27 2.2 7.5 1.0
O A:HOH445 2.2 10.9 1.0
CD2 A:HIS162 3.1 8.7 1.0
CE1 A:HIS27 3.1 8.5 1.0
CG A:ASP158 3.1 10.6 1.0
CD2 A:HIS74 3.1 9.9 1.0
CE1 A:HIS162 3.1 12.1 1.0
CE1 A:HIS74 3.1 10.7 1.0
CD2 A:HIS27 3.2 9.7 1.0
OD1 A:ASP158 3.6 9.2 1.0
ND1 A:HIS162 4.2 11.2 1.0
CG A:HIS162 4.2 9.5 1.0
ND1 A:HIS27 4.2 8.9 1.0
ND1 A:HIS74 4.2 11.2 1.0
CG A:HIS74 4.2 10.2 1.0
CG A:HIS27 4.3 8.4 1.0
CB A:ASP158 4.3 8.8 1.0
CH2 A:TRP123 4.4 9.4 1.0
CB A:TRP160 4.4 8.2 1.0
CZ2 A:TRP123 4.5 10.5 1.0
CG A:TRP160 4.7 8.5 1.0
CB A:ALA163 4.9 8.8 1.0
NE2 A:GLN70 5.0 14.0 1.0
CD1 A:TRP160 5.0 8.7 1.0

Iron binding site 2 out of 2 in 4yet

Go back to Iron Binding Sites List in 4yet
Iron binding site 2 out of 2 in the X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe300

b:10.7
occ:0.93
OD2 B:ASP158 2.0 10.4 1.0
NE2 B:HIS74 2.1 8.9 1.0
NE2 B:HIS162 2.1 9.8 1.0
NE2 B:HIS27 2.2 8.6 1.0
O B:HOH449 2.2 9.2 1.0
CD2 B:HIS74 3.0 10.2 1.0
CD2 B:HIS162 3.1 10.0 1.0
CE1 B:HIS74 3.1 9.5 1.0
CG B:ASP158 3.1 10.4 1.0
CE1 B:HIS27 3.1 8.6 1.0
CE1 B:HIS162 3.2 9.8 1.0
CD2 B:HIS27 3.2 9.4 1.0
OD1 B:ASP158 3.6 10.6 1.0
ND1 B:HIS74 4.2 8.8 1.0
CG B:HIS74 4.2 8.7 1.0
CG B:HIS162 4.2 10.7 1.0
ND1 B:HIS27 4.2 9.7 1.0
ND1 B:HIS162 4.2 10.5 1.0
CG B:HIS27 4.3 10.4 1.0
CB B:ASP158 4.3 9.1 1.0
CH2 B:TRP123 4.4 10.7 1.0
CB B:TRP160 4.4 8.0 1.0
CZ2 B:TRP123 4.5 9.9 1.0
CG B:TRP160 4.7 9.9 1.0
CB B:ALA163 5.0 8.8 1.0
NE2 B:GLN70 5.0 13.0 1.0

Reference:

J.W.Fairman, M.C.Clifton, J.Abendroth, T.E.Edwards, D.Lorimer. X-Ray Crystal Structure of Superoxide Dismutase From Babesia Bovis Solved By Sulfur Sad To Be Published.
Page generated: Sun Dec 13 15:52:53 2020

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