Iron in PDB 4yt4: Iron Guanylylpyridinol (Fegp) Cofactor-Reconstituted Hmdii From Methanocaldococcus Jannaschii

The structure of Iron Guanylylpyridinol (Fegp) Cofactor-Reconstituted Hmdii From Methanocaldococcus Jannaschii, PDB code: 4yt4 was solved by T.Fujishiro, U.Ermler, S.Shima, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	42.76 / 2.20
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	59.810, 59.810, 183.430, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 22.6

The binding sites of Iron atom in the Iron Guanylylpyridinol (Fegp) Cofactor-Reconstituted Hmdii From Methanocaldococcus Jannaschii (pdb code 4yt4). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Iron Guanylylpyridinol (Fegp) Cofactor-Reconstituted Hmdii From Methanocaldococcus Jannaschii, PDB code: 4yt4:

Iron binding site 1 out of 1 in the Iron Guanylylpyridinol (Fegp) Cofactor-Reconstituted Hmdii From Methanocaldococcus Jannaschii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Iron Guanylylpyridinol (Fegp) Cofactor-Reconstituted Hmdii From Methanocaldococcus Jannaschii within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe401 b:83.5 occ:1.00 FE A:FE9401 0.0 83.5 1.0 N1 A:FE9401 1.8 75.2 1.0 C8 A:FE9401 1.9 74.0 1.0 O1 A:FE9401 2.1 73.0 1.0 C2F A:FE9401 2.2 75.7 1.0 C1F A:FE9401 2.2 77.3 1.0 SG A:CYS127 2.4 47.1 1.0 C6 A:FE9401 2.8 72.4 1.0 C7 A:FE9401 2.9 70.2 1.0 O18 A:FE9401 2.9 65.5 1.0 C2 A:FE9401 3.0 72.1 1.0 O2 A:FE9401 3.3 75.0 1.0 O2F A:FE9401 3.3 73.8 1.0 O1F A:FE9401 3.3 78.7 1.0 CB A:CYS127 3.5 37.4 1.0 C5 A:FE9401 4.3 69.0 1.0 C3 A:FE9401 4.4 69.4 1.0 CA A:CYS127 4.7 34.1 1.0 N A:CYS127 4.8 30.0 1.0 CZ A:PHE99 4.9 34.1 1.0 C4 A:FE9401 4.9 69.4 1.0

T.Fujishiro, K.Ataka, U.Ermler, S.Shima. Towards A Functional Identification of Catalytically Inactive [Fe]-Hydrogenase Paralogs. Febs J. V. 282 3412 2015.
ISSN: ISSN 1742-464X
PubMed: 26094576
DOI: 10.1111/FEBS.13351