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Iron in PDB 4z5q: Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 at 1.8 A Resolution

Protein crystallography data

The structure of Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 at 1.8 A Resolution, PDB code: 4z5q was solved by M.Ma, J.Lohman, J.Rudolf, M.D.Miller, H.Cao, J.Osipiuk, A.Joachimiak, G.N.Phillips Jr., B.Shen, Midwest Center For Structural Genomics(Mcsg), Enzyme Discovery For Natural Product Biosynthesis (Natpro), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.88 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 47.307, 83.434, 48.192, 90.00, 97.67, 90.00
R / Rfree (%) 15.9 / 20

Other elements in 4z5q:

The structure of Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 at 1.8 A Resolution also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Chlorine (Cl) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 at 1.8 A Resolution (pdb code 4z5q). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 at 1.8 A Resolution, PDB code: 4z5q:

Iron binding site 1 out of 1 in 4z5q

Go back to Iron Binding Sites List in 4z5q
Iron binding site 1 out of 1 in the Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 at 1.8 A Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 at 1.8 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:17.7
occ:1.00
FE A:HEM401 0.0 17.7 1.0
ND A:HEM401 1.9 17.5 1.0
NA A:HEM401 2.0 17.0 1.0
NB A:HEM401 2.0 17.4 1.0
NC A:HEM401 2.1 16.7 1.0
O A:HOH409 2.2 39.8 1.0
SG A:CYS352 2.3 17.6 1.0
C1D A:HEM401 3.0 18.6 1.0
C4D A:HEM401 3.0 17.6 1.0
C4B A:HEM401 3.0 17.2 1.0
C1A A:HEM401 3.0 17.8 1.0
C1B A:HEM401 3.0 19.1 1.0
C4A A:HEM401 3.0 18.1 1.0
C4C A:HEM401 3.1 18.0 1.0
C1C A:HEM401 3.1 17.7 1.0
CHD A:HEM401 3.4 17.2 1.0
CB A:CYS352 3.4 16.1 1.0
CHB A:HEM401 3.4 19.1 1.0
CHA A:HEM401 3.4 16.8 1.0
CHC A:HEM401 3.4 17.7 1.0
O A:GLY240 4.0 24.6 1.0
CA A:CYS352 4.1 15.4 1.0
C2D A:HEM401 4.2 18.6 1.0
C2A A:HEM401 4.2 16.2 1.0
C3A A:HEM401 4.2 18.5 1.0
C3B A:HEM401 4.3 18.4 1.0
C3D A:HEM401 4.3 18.1 1.0
C2B A:HEM401 4.3 18.7 1.0
C3C A:HEM401 4.3 17.9 1.0
C2C A:HEM401 4.3 17.8 1.0
O4 A:P33407 4.5 43.3 1.0
C A:GLY240 4.6 24.5 1.0
N A:GLY354 4.7 17.8 1.0
O7 A:P33407 4.8 46.9 1.0
C A:CYS352 4.8 16.8 1.0
CA A:GLY240 4.9 27.8 1.0
N A:LEU353 4.9 17.9 1.0

Reference:

M.Ma, J.Lohman, J.Rudolf, M.D.Miller, H.Cao, J.Osipiuk, A.Joachimiak, G.N.Phillips Jr., B.Shen. Crystal Structure of the Lnmz Cytochrome P450 Hydroxylase From the Leinamycin Biosynthetic Pathway of Streptomyces Atroolivaceus S-140 To Be Published.
Page generated: Sun Dec 13 15:54:07 2020

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