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Iron in PDB 5a5j: Cytochrome 2C9 P450 Inhibitor Complex

Enzymatic activity of Cytochrome 2C9 P450 Inhibitor Complex

All present enzymatic activity of Cytochrome 2C9 P450 Inhibitor Complex:
1.14.99.38;

Protein crystallography data

The structure of Cytochrome 2C9 P450 Inhibitor Complex, PDB code: 5a5j was solved by S.E.Skerratt, M.J.De Groot, C.Phillips, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 71.74 / 2.90
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 91.290, 91.290, 169.370, 90.00, 90.00, 120.00
R / Rfree (%) 21.303 / 28.792

Other elements in 5a5j:

The structure of Cytochrome 2C9 P450 Inhibitor Complex also contains other interesting chemical elements:

Fluorine (F) 3 atoms
Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Cytochrome 2C9 P450 Inhibitor Complex (pdb code 5a5j). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Cytochrome 2C9 P450 Inhibitor Complex, PDB code: 5a5j:

Iron binding site 1 out of 1 in 5a5j

Go back to Iron Binding Sites List in 5a5j
Iron binding site 1 out of 1 in the Cytochrome 2C9 P450 Inhibitor Complex


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cytochrome 2C9 P450 Inhibitor Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe1493

b:17.1
occ:1.00
FE A:HEM1493 0.0 17.1 1.0
ND A:HEM1493 1.8 16.7 1.0
NC A:HEM1493 1.9 16.1 1.0
NB A:HEM1493 2.0 8.8 1.0
NA A:HEM1493 2.1 16.9 1.0
SG A:CYS435 2.3 18.7 1.0
C1D A:HEM1493 2.8 19.0 1.0
C4C A:HEM1493 2.9 15.5 1.0
C4D A:HEM1493 2.9 17.6 1.0
C1C A:HEM1493 2.9 17.4 1.0
C4B A:HEM1493 3.0 13.6 1.0
C1B A:HEM1493 3.1 12.2 1.0
C1A A:HEM1493 3.1 18.9 1.0
C4A A:HEM1493 3.2 15.8 1.0
CHD A:HEM1493 3.2 17.3 1.0
CB A:CYS435 3.3 18.0 1.0
CHC A:HEM1493 3.4 16.8 1.0
CHA A:HEM1493 3.4 19.7 1.0
CHB A:HEM1493 3.5 13.1 1.0
CA A:CYS435 4.0 18.4 1.0
C2D A:HEM1493 4.1 19.1 1.0
C3C A:HEM1493 4.1 16.7 1.0
C3D A:HEM1493 4.1 17.8 1.0
C2C A:HEM1493 4.1 16.1 1.0
C3B A:HEM1493 4.2 14.2 1.0
C2B A:HEM1493 4.3 13.0 1.0
C2A A:HEM1493 4.4 19.1 1.0
C3A A:HEM1493 4.4 19.1 1.0
CB A:ALA297 4.5 24.8 1.0
O A:ALA297 4.5 26.3 1.0
C A:CYS435 4.7 17.3 1.0
N A:GLY437 4.7 14.6 1.0
N A:VAL436 4.8 15.6 1.0
CD1 A:PHE428 4.8 16.7 1.0

Reference:

S.E.Skerratt, M.J.De Groot, C.Phillips. Discovery of A Novel Binding Pocket For Cyp 2C9 Inhibitors: Crystallography, Pharmacophore Modelling and Inhibitor Sar. To Be Published.
Page generated: Sun Dec 13 15:55:24 2020

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