Iron in PDB 5aym: Crystal Structure of A Bacterial Homologue of Iron Transporter Ferroportin in Outward-Facing State with Soaked Iron

The structure of Crystal Structure of A Bacterial Homologue of Iron Transporter Ferroportin in Outward-Facing State with Soaked Iron, PDB code: 5aym was solved by R.Taniguchi, H.E.Kato, J.Font, C.N.Deshpande, R.Ishitani, M.Jormakka, O.Nureki, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.16 / 3.00
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.080, 86.170, 96.710, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 26.9

The binding sites of Iron atom in the Crystal Structure of A Bacterial Homologue of Iron Transporter Ferroportin in Outward-Facing State with Soaked Iron (pdb code 5aym). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of A Bacterial Homologue of Iron Transporter Ferroportin in Outward-Facing State with Soaked Iron, PDB code: 5aym:

Iron binding site 1 out of 1 in the Crystal Structure of A Bacterial Homologue of Iron Transporter Ferroportin in Outward-Facing State with Soaked Iron


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Bacterial Homologue of Iron Transporter Ferroportin in Outward-Facing State with Soaked Iron within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe501 b:26.1 occ:0.64 OD1 A:ASP24 2.7 38.3 1.0 O A:THR20 2.7 22.5 1.0 OG1 A:THR20 2.8 28.0 1.0 OG A:SER199 2.8 25.7 1.0 OD1 A:ASN196 2.9 17.0 1.0 CE1 A:PHE200 3.2 17.2 1.0 CD1 A:PHE200 3.3 16.8 1.0 CZ A:PHE200 3.3 23.0 1.0 O A:ASN196 3.5 26.0 1.0 C A:THR20 3.5 24.6 1.0 CA A:THR20 3.6 23.4 1.0 CG A:PHE200 3.6 22.9 1.0 CE2 A:PHE200 3.7 20.9 1.0 CB A:THR20 3.7 21.0 1.0 CG A:ASP24 3.8 24.8 1.0 CD2 A:PHE200 3.8 23.2 1.0 CB A:SER199 3.8 20.8 1.0 N A:ASP24 4.0 22.9 1.0 N A:PHE200 4.0 19.1 1.0 CG A:ASN196 4.0 22.1 1.0 C A:SER199 4.1 19.5 1.0 CA A:PHE200 4.3 18.5 1.0 C A:GLY23 4.4 21.4 1.0 O A:SER199 4.4 23.5 1.0 CA A:GLY23 4.4 24.8 1.0 C A:ASN196 4.4 26.5 1.0 OD2 A:ASP24 4.5 22.6 1.0 CB A:PHE200 4.6 22.1 1.0 CA A:SER199 4.6 21.7 1.0 CA A:ASP24 4.6 20.4 1.0 CA A:ASN196 4.6 26.2 1.0 CB A:ASP24 4.7 18.6 1.0 N A:ARG21 4.8 26.7 1.0 ND2 A:ASN196 4.8 21.0 1.0 N A:GLY23 4.9 21.1 1.0 CG2 A:THR20 4.9 19.9 1.0 N A:THR20 5.0 22.9 1.0 CB A:ASN196 5.0 23.6 1.0

R.Taniguchi, H.E.Kato, J.Font, C.N.Deshpande, M.Wada, K.Ito, R.Ishitani, M.Jormakka, O.Nureki. Outward- and Inward-Facing Structures of A Putative Bacterial Transition-Metal Transporter with Homology to Ferroportin Nat Commun V. 6 8545 2015.
ISSN: ESSN 2041-1723
PubMed: 26461048
DOI: 10.1038/NCOMMS9545