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Iron in PDB 5b4z: Crystal Structure of Heme Binding Protein Hmut H141A Mutant

Protein crystallography data

The structure of Crystal Structure of Heme Binding Protein Hmut H141A Mutant, PDB code: 5b4z was solved by N.Muraki, S.Aono, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.94 / 1.30
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 73.380, 73.380, 147.420, 90.00, 90.00, 90.00
R / Rfree (%) 15.1 / 16.9

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Heme Binding Protein Hmut H141A Mutant (pdb code 5b4z). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Heme Binding Protein Hmut H141A Mutant, PDB code: 5b4z:

Iron binding site 1 out of 1 in 5b4z

Go back to Iron Binding Sites List in 5b4z
Iron binding site 1 out of 1 in the Crystal Structure of Heme Binding Protein Hmut H141A Mutant


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Heme Binding Protein Hmut H141A Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:15.0
occ:1.00
FE A:HEM401 0.0 15.0 1.0
ND A:HEM401 1.9 18.1 1.0
NA A:HEM401 2.0 16.7 1.0
OH A:TYR240 2.0 12.6 1.0
NC A:HEM401 2.1 17.3 1.0
NB A:HEM401 2.1 16.0 1.0
O A:HOH695 2.5 33.2 1.0
C4D A:HEM401 3.0 18.1 1.0
C1D A:HEM401 3.0 17.3 1.0
CZ A:TYR240 3.0 11.0 1.0
C4A A:HEM401 3.0 15.7 1.0
C1A A:HEM401 3.0 17.3 1.0
C1B A:HEM401 3.1 15.1 1.0
C4B A:HEM401 3.1 15.2 1.0
C4C A:HEM401 3.1 17.5 1.0
C1C A:HEM401 3.1 16.1 1.0
CHD A:HEM401 3.4 18.2 1.0
CHA A:HEM401 3.4 18.4 1.0
CHB A:HEM401 3.4 15.5 1.0
CHC A:HEM401 3.5 16.2 1.0
CE1 A:TYR240 3.8 10.9 1.0
CE2 A:TYR240 3.9 11.3 1.0
NE A:ARG242 4.1 13.2 1.0
NH2 A:ARG242 4.2 12.2 1.0
C3D A:HEM401 4.2 19.8 1.0
C2D A:HEM401 4.2 18.8 1.0
C3A A:HEM401 4.2 17.5 1.0
C2A A:HEM401 4.2 18.0 1.0
C2C A:HEM401 4.3 19.2 1.0
C2B A:HEM401 4.3 15.3 1.0
C3C A:HEM401 4.3 19.3 1.0
C3B A:HEM401 4.3 15.5 1.0
CZ A:ARG242 4.6 12.6 1.0
CA A:GLY140 4.8 28.7 0.5

Reference:

N.Muraki, C.Kitatsuji, M.Ogura, T.Uchida, K.Ishimori, S.Aono. Structural Characterization of Heme Environmental Mutants of Cghmut That Shuttles Heme Molecules to Heme Transporters Int J Mol Sci V. 17 2016.
ISSN: ESSN 1422-0067
PubMed: 27240352
DOI: 10.3390/IJMS17060829
Page generated: Mon Aug 5 20:03:08 2024

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