Iron in PDB 5c9m: The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.

The structure of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution., PDB code: 5c9m was solved by B.F.P.Edwards, G.Mahapatra, A.A.Vaishnav, J.S.Brunzelle, M.Huttemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.96 / 1.36
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	34.517, 52.567, 61.771, 109.86, 92.93, 92.20
R / Rfree (%)	12.9 / 17

The binding sites of Iron atom in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. (pdb code 5c9m). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution., PDB code: 5c9m:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:12.6 occ:1.00 FE A:HEC201 0.0 12.6 1.0 ND A:HEC201 1.9 11.7 1.0 NA A:HEC201 2.0 11.6 1.0 NB A:HEC201 2.0 11.7 1.0 NE2 A:HIS18 2.0 11.7 1.0 NC A:HEC201 2.0 13.4 1.0 SD A:MET80 2.3 13.3 1.0 C1D A:HEC201 3.0 12.1 1.0 CE1 A:HIS18 3.0 12.1 1.0 C4D A:HEC201 3.0 11.9 1.0 C1B A:HEC201 3.0 12.1 1.0 C1A A:HEC201 3.0 12.3 1.0 C4A A:HEC201 3.0 12.0 1.0 C4C A:HEC201 3.0 12.4 1.0 C4B A:HEC201 3.0 11.8 1.0 C1C A:HEC201 3.1 13.4 1.0 CD2 A:HIS18 3.1 12.2 1.0 CE A:MET80 3.4 12.8 1.0 CG A:MET80 3.4 14.4 1.0 CHD A:HEC201 3.4 12.3 1.0 CHB A:HEC201 3.4 12.7 1.0 CHA A:HEC201 3.4 11.3 1.0 CHC A:HEC201 3.4 12.7 1.0 ND1 A:HIS18 4.1 12.1 1.0 CB A:MET80 4.2 14.4 1.0 CG A:HIS18 4.2 12.2 1.0 C3A A:HEC201 4.2 11.5 1.0 C2D A:HEC201 4.2 12.3 1.0 C2A A:HEC201 4.2 11.9 1.0 C3C A:HEC201 4.2 13.5 1.0 C2C A:HEC201 4.2 14.7 1.0 C3D A:HEC201 4.3 12.2 1.0 C2B A:HEC201 4.3 12.3 1.0 C3B A:HEC201 4.3 12.9 1.0 OH A:TYR67 4.8 16.4 1.0

Iron binding site 2 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:23.4 occ:0.35 FE2 A:FC6202 0.0 23.4 0.3 C11 A:FC6202 1.8 20.6 0.3 C23 A:FC6202 1.8 23.3 0.3 C21 A:FC6202 1.8 24.0 0.3 C22 A:FC6202 1.8 24.3 0.3 C24 A:FC6202 1.8 22.3 0.3 C26 A:FC6202 1.8 22.7 0.3 N11 A:FC6202 3.0 15.7 0.3 N24 A:FC6202 3.0 15.8 0.3 N23 A:FC6202 3.0 28.3 0.3 N25 A:FC6202 3.0 26.7 0.3 N22 A:FC6202 3.0 27.8 0.3 N21 A:FC6202 3.0 23.2 0.3 N24 A:FC6202 3.1 21.9 0.3 C24 A:FC6202 3.6 20.2 0.3 N25 A:FC6202 4.1 23.0 0.3 O D:HOH355 4.1 33.6 1.0 O A:HOH321 4.1 31.3 1.0 C21 A:FC6202 4.1 21.8 0.3 O A:HOH327 4.3 30.4 1.0 O D:HOH327 4.3 28.6 1.0 C26 A:FC6202 4.4 20.9 0.3 NZ D:LYS13 4.6 21.9 1.0 N21 A:FC6202 4.6 20.4 0.3 NZ A:LYS13 4.7 26.1 1.0 FE2 A:FC6202 4.8 21.9 0.3

Iron binding site 3 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe202 b:21.9 occ:0.34 FE2 A:FC6202 0.0 21.9 0.3 C26 A:FC6202 1.8 20.9 0.3 C22 A:FC6202 1.8 20.3 0.3 C21 A:FC6202 1.8 21.8 0.3 C23 A:FC6202 1.8 23.1 0.3 C11 A:FC6202 1.8 21.0 0.3 C24 A:FC6202 1.8 20.2 0.3 N23 A:FC6202 2.1 28.3 0.3 N21 A:FC6202 2.9 20.4 0.3 N22 A:FC6202 3.0 20.8 0.3 N11 A:FC6202 3.0 24.0 0.3 N25 A:FC6202 3.0 23.0 0.3 N23 A:FC6202 3.0 25.7 0.3 N24 A:FC6202 3.0 21.9 0.3 C23 A:FC6202 3.1 23.3 0.3 CD A:LYS86 4.3 42.1 1.0 NZ A:LYS87 4.6 34.3 1.0 NZ D:LYS87 4.6 39.8 1.0 CE D:LYS87 4.7 35.9 1.0 C26 A:FC6202 4.8 22.7 0.3 FE2 A:FC6202 4.8 23.4 0.3 CB A:LYS86 4.8 26.8 1.0 C24 A:FC6202 4.9 22.3 0.3

Iron binding site 4 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:11.8 occ:1.00 FE B:HEC201 0.0 11.8 1.0 ND B:HEC201 1.9 11.1 1.0 NA B:HEC201 2.0 11.4 1.0 NE2 B:HIS18 2.0 11.5 1.0 NB B:HEC201 2.0 11.5 1.0 NC B:HEC201 2.0 11.5 1.0 SD B:MET80 2.3 12.3 1.0 CE1 B:HIS18 2.9 11.2 1.0 C1B B:HEC201 3.0 12.7 1.0 C1D B:HEC201 3.0 11.6 1.0 C4D B:HEC201 3.0 11.2 1.0 C1A B:HEC201 3.0 11.7 1.0 C4B B:HEC201 3.0 11.9 1.0 C4C B:HEC201 3.0 10.8 1.0 C1C B:HEC201 3.1 11.9 1.0 C4A B:HEC201 3.1 11.1 1.0 CD2 B:HIS18 3.1 12.1 1.0 CG B:MET80 3.4 13.3 1.0 CE B:MET80 3.4 13.2 1.0 CHB B:HEC201 3.4 12.1 1.0 CHD B:HEC201 3.4 11.2 1.0 CHA B:HEC201 3.4 11.2 1.0 CHC B:HEC201 3.4 11.9 1.0 ND1 B:HIS18 4.1 11.9 1.0 CG B:HIS18 4.2 11.3 1.0 CB B:MET80 4.2 12.2 1.0 C2A B:HEC201 4.2 11.7 1.0 C3A B:HEC201 4.2 12.1 1.0 C2B B:HEC201 4.2 12.2 1.0 C2C B:HEC201 4.2 12.9 1.0 C2D B:HEC201 4.3 10.7 1.0 C3C B:HEC201 4.3 11.4 1.0 C3D B:HEC201 4.3 10.4 1.0 C3B B:HEC201 4.3 11.9 1.0 OH B:TYR67 4.8 16.1 1.0

Iron binding site 5 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:20.8 occ:0.98 FE2 B:FC6202 0.0 20.8 1.0 C24 B:FC6202 1.8 24.4 1.0 C11 B:FC6202 1.8 24.1 1.0 C26 B:FC6202 1.8 21.0 1.0 C23 B:FC6202 1.8 21.9 1.0 C22 B:FC6202 1.8 23.6 1.0 C21 B:FC6202 1.8 19.9 1.0 N23 B:FC6202 3.0 22.0 1.0 N24 B:FC6202 3.0 22.3 1.0 N11 B:FC6202 3.0 23.7 1.0 N21 B:FC6202 3.0 23.9 1.0 N25 B:FC6202 3.0 18.4 1.0 N22 B:FC6202 3.0 29.4 1.0 N B:GLY89 4.4 22.0 1.0 CA B:GLY89 4.8 22.0 1.0 CB B:LYS87 4.9 20.7 1.0 CG B:LYS87 4.9 22.8 1.0

Iron binding site 6 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe203 b:20.4 occ:0.39 FE2 B:FC6203 0.0 20.4 0.4 C23 B:FC6203 1.8 21.5 0.4 C22 B:FC6203 1.8 19.3 0.4 C24 B:FC6203 1.8 20.2 0.4 C11 B:FC6203 1.8 21.9 0.4 C26 B:FC6203 1.8 18.7 0.4 C21 B:FC6203 1.8 19.6 0.4 N11 B:FC6203 2.9 23.2 0.3 N23 B:FC6203 2.9 26.9 0.4 N22 B:FC6203 2.9 16.9 0.4 N21 B:FC6203 3.0 14.3 0.4 N24 B:FC6203 3.0 23.2 0.4 N25 B:FC6203 3.0 23.8 0.4 N11 B:FC6203 3.0 25.1 0.4 C11 B:FC6203 3.4 22.1 0.3 N23 B:FC6203 3.9 24.2 0.3 C23 B:FC6203 4.0 20.5 0.3 O B:HOH328 4.2 30.0 1.0 O C:HOH314 4.3 26.6 1.0 O B:HOH327 4.3 31.1 1.0 C26 B:FC6203 4.4 21.3 0.3 O C:HOH370 4.4 46.6 1.0 N21 B:FC6203 4.6 18.7 0.3 NZ B:LYS13 4.6 26.2 1.0 NZ C:LYS13 4.6 20.4 1.0 FE2 B:FC6203 4.7 22.0 0.3 O B:HOH335 4.9 27.4 1.0

Iron binding site 7 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe203 b:22.0 occ:0.28 FE2 B:FC6203 0.0 22.0 0.3 C26 B:FC6203 1.8 21.3 0.3 C23 B:FC6203 1.8 20.5 0.3 C21 B:FC6203 1.8 21.8 0.3 C22 B:FC6203 1.8 20.8 0.3 C24 B:FC6203 1.8 21.6 0.3 C11 B:FC6203 1.8 22.1 0.3 N25 B:FC6203 2.0 23.8 0.4 N21 B:FC6203 2.9 18.7 0.3 N23 B:FC6203 3.0 24.2 0.3 N25 B:FC6203 3.0 22.0 0.3 N24 B:FC6203 3.0 23.4 0.3 N22 B:FC6203 3.0 22.4 0.3 N11 B:FC6203 3.0 23.2 0.3 C21 B:FC6203 3.0 19.6 0.4 CD B:LYS86 4.1 43.9 1.0 NZ C:LYS87 4.5 39.5 1.0 C11 B:FC6203 4.6 21.9 0.4 CE C:LYS87 4.6 35.5 1.0 FE2 B:FC6203 4.7 20.4 0.4 CE B:LYS87 4.8 27.3 1.0 N11 B:FC6203 4.9 25.1 0.4 CB B:LYS86 4.9 29.1 1.0 C22 B:FC6203 5.0 19.3 0.4

Iron binding site 8 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:12.5 occ:1.00 FE C:HEC201 0.0 12.5 1.0 ND C:HEC201 1.9 12.5 1.0 NA C:HEC201 2.0 12.3 1.0 NC C:HEC201 2.0 12.3 1.0 NE2 C:HIS18 2.0 12.6 1.0 NB C:HEC201 2.0 12.6 1.0 SD C:MET80 2.3 12.9 1.0 CE1 C:HIS18 3.0 13.2 1.0 C1D C:HEC201 3.0 12.3 1.0 C4D C:HEC201 3.0 11.9 1.0 C4A C:HEC201 3.0 12.1 1.0 C4B C:HEC201 3.0 12.1 1.0 C1A C:HEC201 3.0 12.0 1.0 C1B C:HEC201 3.0 11.6 1.0 C4C C:HEC201 3.0 11.7 1.0 C1C C:HEC201 3.0 11.9 1.0 CD2 C:HIS18 3.1 12.1 1.0 CG C:MET80 3.4 12.9 1.0 CE C:MET80 3.4 11.9 1.0 CHB C:HEC201 3.4 13.2 1.0 CHD C:HEC201 3.4 12.7 1.0 CHA C:HEC201 3.4 12.5 1.0 CHC C:HEC201 3.4 11.5 1.0 ND1 C:HIS18 4.1 13.2 1.0 CB C:MET80 4.2 13.3 1.0 CG C:HIS18 4.2 13.9 1.0 C3A C:HEC201 4.2 12.6 1.0 C2D C:HEC201 4.2 13.4 1.0 C2C C:HEC201 4.2 13.1 1.0 C3C C:HEC201 4.2 13.6 1.0 C2A C:HEC201 4.3 12.3 1.0 C3D C:HEC201 4.3 13.4 1.0 C2B C:HEC201 4.3 12.8 1.0 C3B C:HEC201 4.3 12.0 1.0 OH C:TYR67 4.7 17.2 1.0

Iron binding site 9 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe202 b:18.1 occ:1.00 FE2 C:FC6202 0.0 18.1 1.0 C21 C:FC6202 1.8 20.4 1.0 C24 C:FC6202 1.8 19.3 1.0 C23 C:FC6202 1.8 20.1 1.0 C22 C:FC6202 1.8 19.9 1.0 C11 C:FC6202 1.8 18.2 1.0 C26 C:FC6202 1.9 20.8 1.0 N25 C:FC6202 2.9 18.4 1.0 N24 C:FC6202 3.0 19.0 1.0 N22 C:FC6202 3.0 19.3 1.0 N23 C:FC6202 3.0 18.0 1.0 N21 C:FC6202 3.0 22.3 1.0 N11 C:FC6202 3.0 19.2 1.0 N C:LYS88 4.7 16.9 1.0 CB C:LYS88 4.9 19.2 1.0 CB C:LYS87 5.0 18.2 1.0 N C:GLY89 5.0 17.4 1.0

Iron binding site 10 out of 10 in the The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:15.2 occ:1.00 FE D:HEC201 0.0 15.2 1.0 ND D:HEC201 2.0 15.2 1.0 NA D:HEC201 2.0 14.5 1.0 NC D:HEC201 2.0 14.2 1.0 NB D:HEC201 2.1 14.1 1.0 NE2 D:HIS18 2.1 14.6 1.0 SD D:MET80 2.3 15.3 1.0 C4D D:HEC201 3.0 14.6 1.0 C1D D:HEC201 3.0 14.5 1.0 C4B D:HEC201 3.0 13.6 1.0 CE1 D:HIS18 3.0 15.9 1.0 C1B D:HEC201 3.0 12.7 1.0 C1A D:HEC201 3.0 14.6 1.0 C4A D:HEC201 3.0 13.7 1.0 C4C D:HEC201 3.1 14.8 1.0 C1C D:HEC201 3.1 15.4 1.0 CD2 D:HIS18 3.1 14.6 1.0 CG D:MET80 3.3 15.2 1.0 CE D:MET80 3.3 15.5 1.0 CHB D:HEC201 3.4 14.6 1.0 CHA D:HEC201 3.4 16.0 1.0 CHD D:HEC201 3.4 15.8 1.0 CHC D:HEC201 3.4 14.1 1.0 ND1 D:HIS18 4.1 16.1 1.0 CB D:MET80 4.2 15.2 1.0 CG D:HIS18 4.2 15.5 1.0 C2D D:HEC201 4.2 15.0 1.0 C2A D:HEC201 4.2 15.3 1.0 C3A D:HEC201 4.2 14.6 1.0 C2B D:HEC201 4.2 14.1 1.0 C3B D:HEC201 4.3 14.7 1.0 C3C D:HEC201 4.3 15.1 1.0 C3D D:HEC201 4.3 15.8 1.0 C2C D:HEC201 4.3 15.2 1.0 OH D:TYR67 4.8 19.6 1.0

B.F.P.Edwards, G.Mahapatra, A.A.Vaishnav, J.S.Brunzelle, M.Huttemann. The Structure of Oxidized Rat Cytochrome C (T28A) at 1.362 Angstroms Resolution. To Be Published.