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Iron in PDB 5cu1: Crystal Structure of Dmsp Lyase Dddq From Ruegeria Pomeroyi Dss-3

Protein crystallography data

The structure of Crystal Structure of Dmsp Lyase Dddq From Ruegeria Pomeroyi Dss-3, PDB code: 5cu1 was solved by S.Y.Chong, M.A.Moran, W.N.Lanzilotta, W.B.Whitman, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.62 / 2.30
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 62.582, 69.878, 49.731, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 26.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Dmsp Lyase Dddq From Ruegeria Pomeroyi Dss-3 (pdb code 5cu1). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Dmsp Lyase Dddq From Ruegeria Pomeroyi Dss-3, PDB code: 5cu1:

Iron binding site 1 out of 1 in 5cu1

Go back to Iron Binding Sites List in 5cu1
Iron binding site 1 out of 1 in the Crystal Structure of Dmsp Lyase Dddq From Ruegeria Pomeroyi Dss-3


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Dmsp Lyase Dddq From Ruegeria Pomeroyi Dss-3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:35.3
occ:0.60
NE2 A:HIS169 2.2 19.8 1.0
OE1 A:GLU134 2.3 22.3 1.0
OE2 A:GLU134 2.4 25.4 1.0
NE2 A:HIS130 2.4 22.1 1.0
CD A:GLU134 2.8 23.5 1.0
CE1 A:HIS169 3.2 16.0 1.0
CD2 A:HIS169 3.2 19.2 1.0
CE1 A:HIS130 3.2 19.8 1.0
CD2 A:HIS130 3.5 21.2 1.0
NE2 A:HIS128 3.6 17.3 1.0
CD2 A:HIS128 3.7 20.5 1.0
CE1 A:TYR136 3.9 20.5 1.0
CG A:GLU134 4.2 13.4 1.0
ND1 A:HIS169 4.3 16.4 1.0
CG A:HIS169 4.3 18.8 1.0
ND1 A:HIS130 4.4 23.0 1.0
ND1 A:HIS163 4.4 15.0 1.0
CG A:HIS130 4.5 21.5 1.0
OH A:TYR136 4.7 19.2 1.0
CD1 A:TYR136 4.7 18.8 1.0
CZ A:TYR136 4.7 17.4 1.0
NE1 A:TRP184 4.8 19.1 1.0
CB A:GLU134 4.8 14.9 1.0
CE1 A:HIS128 4.9 21.2 1.0
CE1 A:HIS163 4.9 15.0 1.0

Reference:

S.Y.Chong, W.N.Lanzilotta. To Be Published To Be Published.
Page generated: Mon Aug 5 21:35:39 2024

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