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Iron in PDB 5cvr: Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form

Protein crystallography data

The structure of Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form, PDB code: 5cvr was solved by A.Volbeda, J.C.Fontecilla-Camps, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.64 / 2.60
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 75.270, 75.270, 212.430, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.7

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form (pdb code 5cvr). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form, PDB code: 5cvr:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5cvr

Go back to Iron Binding Sites List in 5cvr
Iron binding site 1 out of 2 in the Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:0.1
occ:0.60
FE1 A:FES301 0.0 0.1 0.6
S2 A:FES301 2.2 0.8 0.6
S1 A:FES301 2.2 0.6 0.6
FE2 A:FES301 3.1 0.9 0.6
CG A:GLU47 4.4 0.4 1.0
SG A:CYS122 4.9 0.8 1.0

Iron binding site 2 out of 2 in 5cvr

Go back to Iron Binding Sites List in 5cvr
Iron binding site 2 out of 2 in the Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Fnr of A. Fischeri in A Partially Degraded Form within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:0.9
occ:0.60
FE2 A:FES301 0.0 0.9 0.6
S1 A:FES301 2.2 0.6 0.6
S2 A:FES301 2.2 0.8 0.6
SG A:CYS122 2.4 0.8 1.0
FE1 A:FES301 3.1 0.1 0.6
CB A:ARG72 3.3 0.9 1.0
CB A:CYS122 3.9 0.9 1.0
CA A:ARG72 4.0 1.0 1.0
N A:ARG72 4.4 1.0 1.0
O A:ALA70 4.7 0.3 1.0
N A:CYS122 4.8 0.1 1.0

Reference:

A.Volbeda, C.Darnault, O.Renoux, Y.Nicolet, J.C.Fontecilla-Camps. The Crystal Structure of the Global Anaerobic Transcriptional Regulator Fnr Explains Its Extremely Fine-Tuned Monomer-Dimer Equilibrium. Sci Adv V. 1 01086 2015.
ISSN: ESSN 2375-2548
PubMed: 26665177
DOI: 10.1126/SCIADV.1501086
Page generated: Mon Aug 5 21:35:39 2024

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