Iron in PDB 5d1v: Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus

The structure of Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus, PDB code: 5d1v was solved by R.Fromme, M.Holl, J.K.Tang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.59 / 1.74
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	46.960, 41.298, 72.117, 90.00, 107.70, 90.00
R / Rfree (%)	15 / 18.7

The binding sites of Iron atom in the Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus (pdb code 5d1v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus, PDB code: 5d1v:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:9.6 occ:1.00 FE A:HEM201 0.0 9.6 1.0 NC A:HEM201 2.0 11.1 1.0 ND A:HEM201 2.0 12.1 1.0 NB A:HEM201 2.0 10.8 1.0 NA A:HEM201 2.0 9.5 1.0 NE2 A:HIS75 2.1 8.3 1.0 O A:HOH409 2.2 10.8 1.0 C4C A:HEM201 3.0 11.2 1.0 C1D A:HEM201 3.0 9.7 1.0 C4B A:HEM201 3.0 11.8 1.0 C4D A:HEM201 3.1 9.5 1.0 C4A A:HEM201 3.1 9.8 1.0 C1C A:HEM201 3.1 7.5 1.0 C1B A:HEM201 3.1 10.5 1.0 C1A A:HEM201 3.1 11.5 1.0 CE1 A:HIS75 3.1 8.0 1.0 CD2 A:HIS75 3.1 10.2 1.0 HE1 A:HIS75 3.2 9.6 1.0 HD2 A:HIS75 3.3 12.3 1.0 CHD A:HEM201 3.3 11.2 1.0 CHC A:HEM201 3.4 11.0 1.0 CHB A:HEM201 3.4 11.6 1.0 CHA A:HEM201 3.4 10.3 1.0 HE1 A:TRP88 3.5 12.3 1.0 O A:HOH433 4.0 22.0 1.0 NE1 A:TRP88 4.0 10.3 1.0 C3C A:HEM201 4.2 12.6 1.0 ND1 A:HIS75 4.2 7.4 1.0 C3B A:HEM201 4.3 10.0 1.0 C2D A:HEM201 4.3 11.8 1.0 CG A:HIS75 4.3 9.3 1.0 C3D A:HEM201 4.3 10.2 1.0 HE21 A:GLN48 4.3 51.9 1.0 C2B A:HEM201 4.3 7.9 1.0 C2C A:HEM201 4.3 9.2 1.0 C3A A:HEM201 4.3 11.4 1.0 C2A A:HEM201 4.3 12.4 1.0 HE3 A:MET120 4.3 17.9 1.0 HZ2 A:TRP88 4.7 12.5 1.0 CD1 A:TRP88 4.7 7.2 1.0 HD1 A:TRP88 4.7 8.7 1.0 CE2 A:TRP88 4.8 9.1 1.0 HG2 A:MET120 4.9 11.7 1.0 NE2 A:GLN48 4.9 43.2 1.0 HZ A:PHE37 5.0 14.3 1.0 HD1 A:HIS75 5.0 8.9 1.0

Iron binding site 2 out of 2 in the Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:10.9 occ:1.00 FE B:HEM201 0.0 10.9 1.0 ND B:HEM201 2.0 9.6 1.0 NB B:HEM201 2.0 9.0 1.0 NA B:HEM201 2.0 11.2 1.0 NC B:HEM201 2.0 9.8 1.0 NE2 B:HIS75 2.1 9.9 1.0 O B:HOH389 2.3 12.2 1.0 C4B B:HEM201 3.0 10.2 1.0 C1D B:HEM201 3.0 12.8 1.0 C4D B:HEM201 3.0 9.6 1.0 C4C B:HEM201 3.0 10.7 1.0 C1A B:HEM201 3.0 14.3 1.0 C4A B:HEM201 3.0 11.3 1.0 C1B B:HEM201 3.0 10.1 1.0 CE1 B:HIS75 3.1 9.7 1.0 C1C B:HEM201 3.1 9.9 1.0 CD2 B:HIS75 3.2 9.9 1.0 HE1 B:HIS75 3.2 11.6 1.0 HD2 B:HIS75 3.3 11.9 1.0 CHD B:HEM201 3.4 9.6 1.0 CHC B:HEM201 3.4 10.2 1.0 CHA B:HEM201 3.4 12.0 1.0 HE1 B:TRP88 3.4 12.8 1.0 CHB B:HEM201 3.4 12.6 1.0 HE22 B:GLN48 3.9 29.4 1.0 NE1 B:TRP88 4.0 10.7 1.0 ND1 B:HIS75 4.2 9.6 1.0 C3B B:HEM201 4.2 12.8 1.0 C2D B:HEM201 4.2 13.3 1.0 C3D B:HEM201 4.2 16.1 1.0 C3A B:HEM201 4.2 11.1 1.0 C2A B:HEM201 4.3 11.5 1.0 C3C B:HEM201 4.3 10.8 1.0 C2B B:HEM201 4.3 9.6 1.0 CG B:HIS75 4.3 9.6 1.0 C2C B:HEM201 4.3 9.1 1.0 HE3 B:MET120 4.4 34.1 1.0 NE2 B:GLN48 4.5 24.5 1.0 HE21 B:GLN48 4.5 29.4 1.0 CD1 B:TRP88 4.7 13.0 1.0 HD1 B:TRP88 4.7 15.7 1.0 HG2 B:MET120 4.7 26.4 1.0 HZ2 B:TRP88 4.7 12.8 1.0 CE2 B:TRP88 4.8 9.5 1.0 HD1 B:HIS75 5.0 11.5 1.0

R.Fromme, M.Holl, J.K.Tang. Crystal Structure and Thermal Stability of Hemoglobin From Thermophilic Phototrophic Bacterium Chloroflexus Aurantiacus To Be Published.