Iron in PDB 5d51: Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Enzymatic activity of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
All present enzymatic activity of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network:
1.12.99.6;
Protein crystallography data
The structure of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network, PDB code: 5d51
was solved by
J.Kalms,
A.Schmidt,
S.Frielingsdorf,
P.Van Der Linden,
D.Von Stetten,
O.Lenz,
P.Carpentier,
P.Scheerer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
47.79 /
1.47
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
73.387,
95.574,
119.752,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
13.3 /
15
|
Other elements in 5d51:
The structure of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Iron atom in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
(pdb code 5d51). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 13 binding sites of Iron where determined in the
Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network, PDB code: 5d51:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 1 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
L:Fe701
b:13.9
occ:1.00
|
FE
|
L:NFV701
|
0.0
|
13.9
|
1.0
|
C2
|
L:NFV701
|
1.8
|
13.4
|
1.0
|
C3
|
L:NFV701
|
1.9
|
13.9
|
1.0
|
C1
|
L:NFV701
|
1.9
|
13.8
|
1.0
|
O4
|
L:NFV701
|
2.2
|
16.6
|
1.0
|
SG
|
L:CYS78
|
2.3
|
14.6
|
1.0
|
SG
|
L:CYS600
|
2.3
|
15.1
|
1.0
|
NI
|
L:NFV701
|
2.8
|
15.9
|
1.0
|
O1
|
L:NFV701
|
2.9
|
15.5
|
1.0
|
N3
|
L:NFV701
|
3.0
|
13.9
|
1.0
|
N2
|
L:NFV701
|
3.0
|
13.8
|
1.0
|
CB
|
L:CYS78
|
3.4
|
14.8
|
1.0
|
CB
|
L:CYS600
|
3.4
|
14.8
|
1.0
|
CG1
|
L:VAL551
|
4.2
|
17.4
|
1.0
|
NE2
|
L:HIS82
|
4.2
|
13.2
|
1.0
|
CD
|
L:ARG530
|
4.3
|
15.6
|
1.0
|
NH1
|
L:ARG530
|
4.4
|
18.8
|
1.0
|
SG
|
L:CYS597
|
4.4
|
18.7
|
1.0
|
SG
|
L:CYS81
|
4.4
|
16.5
|
1.0
|
CB
|
L:CYS597
|
4.4
|
15.1
|
1.0
|
CD
|
L:PRO552
|
4.7
|
13.0
|
1.0
|
CA
|
L:CYS78
|
4.8
|
13.9
|
1.0
|
CA
|
L:CYS600
|
4.8
|
14.6
|
1.0
|
SG
|
L:CYS75
|
4.8
|
18.6
|
1.0
|
CB
|
L:CYS75
|
4.9
|
15.4
|
1.0
|
CD2
|
L:HIS82
|
5.0
|
11.7
|
1.0
|
CG
|
L:PRO552
|
5.0
|
13.4
|
1.0
|
NE
|
L:ARG530
|
5.0
|
16.9
|
1.0
|
|
Iron binding site 2 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 2 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:18.3
occ:1.00
|
FE1
|
S:SF41001
|
0.0
|
18.3
|
1.0
|
S3
|
S:SF41001
|
2.3
|
19.7
|
1.0
|
SG
|
S:CYS221
|
2.3
|
17.5
|
1.0
|
S4
|
S:SF41001
|
2.3
|
18.5
|
1.0
|
S2
|
S:SF41001
|
2.3
|
20.3
|
1.0
|
FE3
|
S:SF41001
|
2.7
|
19.8
|
1.0
|
FE2
|
S:SF41001
|
2.7
|
19.3
|
1.0
|
FE4
|
S:SF41001
|
2.8
|
20.3
|
1.0
|
CB
|
S:CYS221
|
3.2
|
16.1
|
1.0
|
S1
|
S:SF41001
|
3.9
|
21.8
|
1.0
|
CD1
|
S:ILE243
|
3.9
|
20.4
|
1.0
|
CG1
|
S:ILE243
|
4.4
|
18.6
|
1.0
|
CD
|
S:PRO224
|
4.5
|
17.9
|
1.0
|
CA
|
S:GLY223
|
4.5
|
17.6
|
1.0
|
N
|
S:GLY223
|
4.5
|
17.5
|
1.0
|
CA
|
S:CYS221
|
4.6
|
14.5
|
1.0
|
SG
|
S:CYS215
|
4.7
|
19.5
|
1.0
|
N
|
S:TYR217
|
4.7
|
16.9
|
1.0
|
ND1
|
S:HIS187
|
4.7
|
20.9
|
1.0
|
SG
|
S:CYS190
|
4.8
|
20.2
|
1.0
|
N
|
S:LEU216
|
4.8
|
18.0
|
1.0
|
C
|
S:CYS221
|
4.8
|
15.2
|
1.0
|
CB
|
S:LEU216
|
4.9
|
16.5
|
1.0
|
C
|
S:LEU216
|
4.9
|
17.4
|
1.0
|
O
|
S:CYS221
|
5.0
|
17.2
|
1.0
|
|
Iron binding site 3 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 3 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:19.3
occ:1.00
|
FE2
|
S:SF41001
|
0.0
|
19.3
|
1.0
|
S4
|
S:SF41001
|
2.3
|
18.5
|
1.0
|
SG
|
S:CYS215
|
2.3
|
19.5
|
1.0
|
S1
|
S:SF41001
|
2.3
|
21.8
|
1.0
|
S3
|
S:SF41001
|
2.3
|
19.7
|
1.0
|
FE4
|
S:SF41001
|
2.7
|
20.3
|
1.0
|
FE3
|
S:SF41001
|
2.7
|
19.8
|
1.0
|
FE1
|
S:SF41001
|
2.7
|
18.3
|
1.0
|
CB
|
S:CYS215
|
3.4
|
20.1
|
1.0
|
N
|
S:LEU216
|
3.8
|
18.0
|
1.0
|
S2
|
S:SF41001
|
3.9
|
20.3
|
1.0
|
CA
|
S:CYS215
|
3.9
|
19.3
|
1.0
|
N
|
S:TYR217
|
4.2
|
16.9
|
1.0
|
C
|
S:CYS215
|
4.3
|
18.4
|
1.0
|
CB
|
S:PHE196
|
4.4
|
22.3
|
1.0
|
ND1
|
S:HIS187
|
4.5
|
20.9
|
1.0
|
CD1
|
S:PHE196
|
4.5
|
23.5
|
1.0
|
CB
|
S:ARG192
|
4.7
|
21.5
|
1.0
|
CB
|
S:TYR217
|
4.7
|
17.8
|
1.0
|
CE1
|
S:HIS187
|
4.7
|
22.7
|
1.0
|
CA
|
S:LEU216
|
4.7
|
17.4
|
1.0
|
O
|
S:ARG192
|
4.8
|
24.3
|
1.0
|
C
|
S:LEU216
|
4.8
|
17.4
|
1.0
|
CG
|
S:PHE196
|
4.8
|
22.7
|
1.0
|
CA
|
S:TYR217
|
4.8
|
16.7
|
1.0
|
SG
|
S:CYS221
|
4.9
|
17.5
|
1.0
|
SG
|
S:CYS190
|
4.9
|
20.2
|
1.0
|
|
Iron binding site 4 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 4 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:19.8
occ:1.00
|
FE3
|
S:SF41001
|
0.0
|
19.8
|
1.0
|
S1
|
S:SF41001
|
2.3
|
21.8
|
1.0
|
S2
|
S:SF41001
|
2.3
|
20.3
|
1.0
|
S4
|
S:SF41001
|
2.3
|
18.5
|
1.0
|
SG
|
S:CYS190
|
2.3
|
20.2
|
1.0
|
FE4
|
S:SF41001
|
2.7
|
20.3
|
1.0
|
FE2
|
S:SF41001
|
2.7
|
19.3
|
1.0
|
FE1
|
S:SF41001
|
2.7
|
18.3
|
1.0
|
CB
|
S:CYS190
|
3.1
|
21.9
|
1.0
|
S3
|
S:SF41001
|
3.9
|
19.7
|
1.0
|
CB
|
S:ARG192
|
4.1
|
21.5
|
1.0
|
CD1
|
S:ILE243
|
4.2
|
20.4
|
1.0
|
CG2
|
S:ILE243
|
4.3
|
18.1
|
1.0
|
ND1
|
S:HIS187
|
4.6
|
20.9
|
1.0
|
CA
|
S:CYS190
|
4.6
|
21.7
|
1.0
|
N
|
S:ARG193
|
4.7
|
23.1
|
1.0
|
C
|
S:ARG192
|
4.7
|
22.8
|
1.0
|
CA
|
S:ARG192
|
4.8
|
22.2
|
1.0
|
SG
|
S:CYS221
|
4.8
|
17.5
|
1.0
|
CG1
|
S:ILE243
|
4.8
|
18.6
|
1.0
|
N
|
S:ARG192
|
4.8
|
22.3
|
1.0
|
SG
|
S:CYS215
|
4.9
|
19.5
|
1.0
|
CG
|
S:ARG192
|
4.9
|
20.8
|
1.0
|
C
|
S:CYS190
|
4.9
|
22.7
|
1.0
|
CA
|
S:HIS187
|
5.0
|
21.8
|
1.0
|
|
Iron binding site 5 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 5 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1001
b:20.3
occ:1.00
|
FE4
|
S:SF41001
|
0.0
|
20.3
|
1.0
|
ND1
|
S:HIS187
|
2.1
|
20.9
|
1.0
|
S2
|
S:SF41001
|
2.3
|
20.3
|
1.0
|
S1
|
S:SF41001
|
2.3
|
21.8
|
1.0
|
S3
|
S:SF41001
|
2.3
|
19.7
|
1.0
|
FE2
|
S:SF41001
|
2.7
|
19.3
|
1.0
|
FE3
|
S:SF41001
|
2.7
|
19.8
|
1.0
|
FE1
|
S:SF41001
|
2.8
|
18.3
|
1.0
|
CE1
|
S:HIS187
|
2.9
|
22.7
|
1.0
|
CG
|
S:HIS187
|
3.2
|
23.5
|
1.0
|
CB
|
S:HIS187
|
3.6
|
21.7
|
1.0
|
CA
|
S:HIS187
|
3.9
|
21.8
|
1.0
|
S4
|
S:SF41001
|
3.9
|
18.5
|
1.0
|
NE2
|
S:HIS187
|
4.1
|
26.4
|
1.0
|
CD2
|
S:HIS187
|
4.2
|
27.1
|
1.0
|
CG
|
S:PRO224
|
4.3
|
19.4
|
1.0
|
CD
|
S:PRO224
|
4.3
|
17.9
|
1.0
|
SG
|
S:CYS215
|
4.6
|
19.5
|
1.0
|
CB
|
S:CYS190
|
4.6
|
21.9
|
1.0
|
O
|
S:HIS187
|
4.7
|
25.3
|
1.0
|
SG
|
S:CYS190
|
4.7
|
20.2
|
1.0
|
N
|
S:PRO224
|
4.8
|
18.8
|
1.0
|
CD1
|
S:PHE196
|
4.8
|
23.5
|
1.0
|
SG
|
S:CYS221
|
4.8
|
17.5
|
1.0
|
N
|
S:HIS187
|
4.8
|
20.7
|
1.0
|
C
|
S:HIS187
|
4.9
|
22.4
|
1.0
|
|
Iron binding site 6 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 6 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1002
b:15.6
occ:1.00
|
FE1
|
S:F3S1002
|
0.0
|
15.6
|
1.0
|
S1
|
S:F3S1002
|
2.3
|
16.2
|
1.0
|
SG
|
S:CYS249
|
2.3
|
16.1
|
1.0
|
S2
|
S:F3S1002
|
2.3
|
15.7
|
1.0
|
S3
|
S:F3S1002
|
2.3
|
16.7
|
1.0
|
FE3
|
S:F3S1002
|
2.7
|
15.8
|
1.0
|
FE4
|
S:F3S1002
|
2.7
|
15.6
|
1.0
|
CB
|
S:CYS249
|
3.2
|
15.9
|
1.0
|
CA
|
S:CYS249
|
3.6
|
13.8
|
1.0
|
S4
|
S:F3S1002
|
3.9
|
15.4
|
1.0
|
N
|
S:ILE250
|
4.1
|
14.5
|
1.0
|
N
|
S:GLY251
|
4.2
|
14.9
|
1.0
|
C
|
S:CYS249
|
4.3
|
14.8
|
1.0
|
N
|
S:CYS252
|
4.4
|
17.1
|
1.0
|
CG2
|
S:THR226
|
4.5
|
16.5
|
1.0
|
CG1
|
S:ILE186
|
4.6
|
24.0
|
1.0
|
O
|
S:HOH1234
|
4.7
|
19.5
|
0.5
|
CA
|
S:GLY251
|
4.8
|
16.7
|
1.0
|
SG
|
S:CYS252
|
4.8
|
16.1
|
1.0
|
CG
|
S:PRO242
|
4.8
|
14.7
|
1.0
|
SG
|
S:CYS230
|
4.9
|
16.6
|
1.0
|
N
|
S:CYS249
|
4.9
|
13.4
|
1.0
|
CD1
|
S:ILE186
|
4.9
|
24.6
|
1.0
|
O
|
S:HOH1234
|
5.0
|
20.6
|
0.5
|
|
Iron binding site 7 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 7 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1002
b:15.8
occ:1.00
|
FE3
|
S:F3S1002
|
0.0
|
15.8
|
1.0
|
S3
|
S:F3S1002
|
2.3
|
16.7
|
1.0
|
S1
|
S:F3S1002
|
2.3
|
16.2
|
1.0
|
S4
|
S:F3S1002
|
2.3
|
15.4
|
1.0
|
SG
|
S:CYS230
|
2.3
|
16.6
|
1.0
|
FE1
|
S:F3S1002
|
2.7
|
15.6
|
1.0
|
FE4
|
S:F3S1002
|
2.7
|
15.6
|
1.0
|
CB
|
S:CYS230
|
3.3
|
16.8
|
1.0
|
ND2
|
S:ASN228
|
4.0
|
16.1
|
1.0
|
S2
|
S:F3S1002
|
4.0
|
15.7
|
1.0
|
NE1
|
S:TRP235
|
4.3
|
14.3
|
1.0
|
CD1
|
S:ILE186
|
4.3
|
24.6
|
1.0
|
O
|
S:HOH1165
|
4.5
|
15.7
|
1.0
|
CG
|
S:ASN228
|
4.5
|
15.9
|
1.0
|
CG
|
S:PRO242
|
4.5
|
14.7
|
1.0
|
CD
|
S:PRO242
|
4.5
|
14.7
|
1.0
|
CB
|
S:ASN228
|
4.6
|
16.2
|
1.0
|
SG
|
S:CYS252
|
4.7
|
16.1
|
1.0
|
CA
|
S:CYS230
|
4.8
|
16.8
|
1.0
|
SG
|
S:CYS249
|
4.8
|
16.1
|
1.0
|
CG1
|
S:ILE186
|
4.9
|
24.0
|
1.0
|
|
Iron binding site 8 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 8 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1002
b:15.6
occ:1.00
|
FE4
|
S:F3S1002
|
0.0
|
15.6
|
1.0
|
SG
|
S:CYS252
|
2.3
|
16.1
|
1.0
|
S4
|
S:F3S1002
|
2.3
|
15.4
|
1.0
|
S2
|
S:F3S1002
|
2.3
|
15.7
|
1.0
|
S3
|
S:F3S1002
|
2.3
|
16.7
|
1.0
|
FE3
|
S:F3S1002
|
2.7
|
15.8
|
1.0
|
FE1
|
S:F3S1002
|
2.7
|
15.6
|
1.0
|
CB
|
S:CYS252
|
3.4
|
16.8
|
1.0
|
N
|
S:CYS252
|
3.8
|
17.1
|
1.0
|
O
|
L:HOH877
|
3.9
|
17.2
|
1.0
|
S1
|
S:F3S1002
|
3.9
|
16.2
|
1.0
|
O
|
S:HOH1165
|
4.0
|
15.7
|
1.0
|
CA
|
S:CYS252
|
4.0
|
17.5
|
1.0
|
NZ
|
L:LYS226
|
4.1
|
16.5
|
1.0
|
N
|
S:SER253
|
4.5
|
17.9
|
1.0
|
ND2
|
S:ASN228
|
4.5
|
16.1
|
1.0
|
C
|
S:CYS252
|
4.6
|
17.9
|
1.0
|
O
|
S:HOH1234
|
4.6
|
20.6
|
0.5
|
SG
|
S:CYS249
|
4.7
|
16.1
|
1.0
|
SG
|
S:CYS230
|
4.7
|
16.6
|
1.0
|
C
|
S:GLY251
|
5.0
|
17.2
|
1.0
|
|
Iron binding site 9 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 9 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1003
b:18.1
occ:1.00
|
FE1
|
S:F4S1003
|
0.0
|
18.1
|
1.0
|
SG
|
S:CYS17
|
2.3
|
14.7
|
1.0
|
SG
|
S:CYS19
|
2.3
|
15.8
|
1.0
|
S2
|
S:F4S1003
|
2.3
|
16.1
|
1.0
|
S1
|
S:F4S1003
|
2.3
|
17.8
|
1.0
|
FE2
|
S:F4S1003
|
2.6
|
17.3
|
1.0
|
FE4
|
S:F4S1003
|
2.9
|
27.0
|
0.5
|
FE4
|
S:F4S1003
|
3.0
|
21.7
|
0.5
|
CB
|
S:CYS17
|
3.4
|
13.8
|
1.0
|
CB
|
S:CYS19
|
3.5
|
15.4
|
1.0
|
FE3
|
S:F4S1003
|
3.6
|
16.5
|
1.0
|
N
|
S:CYS19
|
3.7
|
14.4
|
1.0
|
S3
|
S:F4S1003
|
3.7
|
15.9
|
1.0
|
N
|
S:CYS17
|
3.7
|
15.2
|
1.0
|
CA
|
S:CYS17
|
4.0
|
14.5
|
1.0
|
N
|
S:THR18
|
4.1
|
13.9
|
1.0
|
NE2
|
L:HIS229
|
4.1
|
14.5
|
1.0
|
CA
|
S:CYS19
|
4.1
|
14.5
|
1.0
|
C
|
S:CYS17
|
4.2
|
13.5
|
1.0
|
SG
|
S:CYS149
|
4.4
|
15.0
|
1.0
|
SG
|
S:CYS115
|
4.6
|
18.1
|
1.0
|
O
|
S:HOH1140
|
4.6
|
15.9
|
1.0
|
N
|
S:CYS20
|
4.8
|
14.2
|
1.0
|
C
|
S:THR18
|
4.8
|
14.8
|
1.0
|
CD2
|
L:HIS229
|
4.8
|
14.3
|
1.0
|
C
|
S:GLU16
|
4.9
|
16.5
|
0.5
|
C
|
S:GLU16
|
4.9
|
16.5
|
0.6
|
C
|
S:CYS19
|
4.9
|
13.9
|
1.0
|
SG
|
S:CYS20
|
5.0
|
17.7
|
1.0
|
|
Iron binding site 10 out
of 13 in 5d51
Go back to
Iron Binding Sites List in 5d51
Iron binding site 10 out
of 13 in the Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Krypton Derivatization of An O2-Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Gas Tunnel Network within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe1003
b:17.3
occ:1.00
|
FE2
|
S:F4S1003
|
0.0
|
17.3
|
1.0
|
S3
|
S:F4S1003
|
2.3
|
15.9
|
1.0
|
SG
|
S:CYS115
|
2.3
|
18.1
|
1.0
|
S2
|
S:F4S1003
|
2.3
|
16.1
|
1.0
|
S1
|
S:F4S1003
|
2.3
|
17.8
|
1.0
|
FE1
|
S:F4S1003
|
2.6
|
18.1
|
1.0
|
FE3
|
S:F4S1003
|
2.7
|
16.5
|
1.0
|
FE4
|
S:F4S1003
|
3.3
|
27.0
|
0.5
|
CB
|
S:CYS115
|
3.3
|
18.5
|
1.0
|
FE4
|
S:F4S1003
|
3.8
|
21.7
|
0.5
|
O
|
S:HOH1113
|
3.9
|
19.0
|
1.0
|
N
|
S:CYS115
|
4.0
|
15.3
|
1.0
|
SG
|
S:CYS19
|
4.0
|
15.8
|
1.0
|
O
|
S:HOH1140
|
4.1
|
15.9
|
1.0
|
CA
|
S:CYS115
|
4.2
|
15.5
|
1.0
|
SG
|
S:CYS120
|
4.3
|
15.8
|
1.0
|
CB
|
S:CYS120
|
4.4
|
14.5
|
1.0
|
N
|
S:CYS17
|
4.5
|
15.2
|
1.0
|
SG
|
S:CYS149
|
4.7
|
15.0
|
1.0
|
SG
|
S:CYS17
|
4.7
|
14.7
|
1.0
|
SG
|
S:CYS20
|
4.7
|
17.7
|
1.0
|
CA
|
S:GLU16
|
4.7
|
17.1
|
0.5
|
CA
|
S:GLU16
|
4.8
|
17.2
|
0.6
|
CB
|
S:GLU16
|
4.9
|
20.5
|
0.5
|
|
Reference:
J.Kalms,
A.Schmidt,
S.Frielingsdorf,
P.Van Der Linden,
D.Von Stetten,
O.Lenz,
P.Carpentier,
P.Scheerer.
Krypton Derivatization of An O2 -Tolerant Membrane-Bound [Nife] Hydrogenase Reveals A Hydrophobic Tunnel Network For Gas Transport. Angew.Chem.Int.Ed.Engl. V. 55 5586 2016.
ISSN: ESSN 1521-3773
PubMed: 26913499
DOI: 10.1002/ANIE.201508976
Page generated: Mon Aug 5 21:46:54 2024
|