Iron in PDB 5d8x: 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
Enzymatic activity of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
All present enzymatic activity of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa:
1.16.3.1;
Protein crystallography data
The structure of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa, PDB code: 5d8x
was solved by
S.Lovell,
K.P.Battaile,
Y.Wang,
H.Yao,
M.Rivera,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
41.01 /
1.50
|
|
Space group
|
P 32
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
125.273,
125.273,
274.180,
90.00,
90.00,
120.00
|
|
R / Rfree (%)
|
15.2 /
17.3
|
Other elements in 5d8x:
The structure of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa also contains other interesting chemical elements:
Iron Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Iron atom in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
(pdb code 5d8x). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 12 binding sites of Iron where determined in the
1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa, PDB code: 5d8x:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 1 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:14.2
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
14.2
|
1.0
|
|
ND
|
A:HEM201
|
2.0
|
14.8
|
1.0
|
|
NB
|
A:HEM201
|
2.0
|
15.1
|
1.0
|
|
NC
|
A:HEM201
|
2.0
|
15.1
|
1.0
|
|
NA
|
A:HEM201
|
2.0
|
13.6
|
1.0
|
|
SD
|
A:MET52
|
2.3
|
12.7
|
1.0
|
|
SD
|
B:MET52
|
2.3
|
13.0
|
1.0
|
|
C4D
|
A:HEM201
|
3.0
|
13.3
|
1.0
|
|
C1D
|
A:HEM201
|
3.0
|
16.9
|
1.0
|
|
C1A
|
A:HEM201
|
3.1
|
13.0
|
1.0
|
|
C1B
|
A:HEM201
|
3.1
|
15.7
|
1.0
|
|
C1C
|
A:HEM201
|
3.1
|
14.2
|
1.0
|
|
C4B
|
A:HEM201
|
3.1
|
17.2
|
1.0
|
|
C4A
|
A:HEM201
|
3.1
|
14.7
|
1.0
|
|
C4C
|
A:HEM201
|
3.1
|
13.5
|
1.0
|
|
CE
|
A:MET52
|
3.3
|
13.1
|
1.0
|
|
CE
|
B:MET52
|
3.3
|
14.8
|
1.0
|
|
CHA
|
A:HEM201
|
3.4
|
14.8
|
1.0
|
|
CHC
|
A:HEM201
|
3.4
|
17.8
|
1.0
|
|
CHD
|
A:HEM201
|
3.4
|
17.1
|
1.0
|
|
CHB
|
A:HEM201
|
3.4
|
15.7
|
1.0
|
|
CG
|
B:MET52
|
3.5
|
13.2
|
1.0
|
|
CG
|
A:MET52
|
3.5
|
10.7
|
1.0
|
|
C3D
|
A:HEM201
|
4.2
|
16.6
|
1.0
|
|
C2D
|
A:HEM201
|
4.2
|
14.8
|
1.0
|
|
C2A
|
A:HEM201
|
4.3
|
16.4
|
1.0
|
|
CB
|
B:MET52
|
4.3
|
11.4
|
1.0
|
|
C3A
|
A:HEM201
|
4.3
|
16.5
|
1.0
|
|
C2C
|
A:HEM201
|
4.3
|
13.4
|
1.0
|
|
C3B
|
A:HEM201
|
4.3
|
14.9
|
1.0
|
|
C2B
|
A:HEM201
|
4.3
|
16.2
|
1.0
|
|
CB
|
A:MET52
|
4.3
|
11.6
|
1.0
|
|
C3C
|
A:HEM201
|
4.3
|
15.1
|
1.0
|
|
Iron binding site 2 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 2 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe202
b:16.2
occ:1.00
|
FE
|
C:HEM202
|
0.0
|
16.2
|
1.0
|
|
NC
|
C:HEM202
|
2.0
|
15.5
|
1.0
|
|
NB
|
C:HEM202
|
2.0
|
15.4
|
1.0
|
|
NA
|
C:HEM202
|
2.0
|
15.6
|
1.0
|
|
ND
|
C:HEM202
|
2.1
|
16.2
|
1.0
|
|
SD
|
C:MET52
|
2.3
|
15.8
|
1.0
|
|
SD
|
D:MET52
|
2.4
|
15.3
|
1.0
|
|
C1C
|
C:HEM202
|
3.0
|
20.3
|
1.0
|
|
C4C
|
C:HEM202
|
3.0
|
17.5
|
1.0
|
|
C4B
|
C:HEM202
|
3.0
|
18.1
|
1.0
|
|
C1A
|
C:HEM202
|
3.1
|
17.9
|
1.0
|
|
C1B
|
C:HEM202
|
3.1
|
19.9
|
1.0
|
|
C1D
|
C:HEM202
|
3.1
|
22.1
|
1.0
|
|
C4A
|
C:HEM202
|
3.1
|
18.4
|
1.0
|
|
C4D
|
C:HEM202
|
3.1
|
17.6
|
1.0
|
|
CE
|
C:MET52
|
3.3
|
16.2
|
1.0
|
|
CE
|
D:MET52
|
3.3
|
13.9
|
1.0
|
|
CHC
|
C:HEM202
|
3.4
|
16.7
|
1.0
|
|
CHD
|
C:HEM202
|
3.4
|
19.7
|
1.0
|
|
CHA
|
C:HEM202
|
3.4
|
16.1
|
1.0
|
|
CHB
|
C:HEM202
|
3.5
|
19.3
|
1.0
|
|
CG
|
C:MET52
|
3.5
|
12.2
|
1.0
|
|
CG
|
D:MET52
|
3.5
|
11.8
|
1.0
|
|
C2C
|
C:HEM202
|
4.2
|
18.8
|
1.0
|
|
CB
|
D:MET52
|
4.2
|
13.7
|
1.0
|
|
C3C
|
C:HEM202
|
4.3
|
17.2
|
1.0
|
|
C3B
|
C:HEM202
|
4.3
|
20.2
|
1.0
|
|
CB
|
C:MET52
|
4.3
|
12.2
|
1.0
|
|
C2A
|
C:HEM202
|
4.3
|
17.6
|
1.0
|
|
C3A
|
C:HEM202
|
4.3
|
16.6
|
1.0
|
|
C2B
|
C:HEM202
|
4.3
|
18.9
|
1.0
|
|
C2D
|
C:HEM202
|
4.3
|
17.2
|
1.0
|
|
C3D
|
C:HEM202
|
4.3
|
16.7
|
1.0
|
|
Iron binding site 3 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 3 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:16.3
occ:1.00
|
FE
|
E:HEM201
|
0.0
|
16.3
|
1.0
|
|
ND
|
E:HEM201
|
2.0
|
14.4
|
1.0
|
|
NC
|
E:HEM201
|
2.0
|
14.5
|
1.0
|
|
NB
|
E:HEM201
|
2.0
|
16.9
|
1.0
|
|
NA
|
E:HEM201
|
2.1
|
14.7
|
1.0
|
|
SD
|
F:MET52
|
2.3
|
15.4
|
1.0
|
|
SD
|
E:MET52
|
2.3
|
14.8
|
1.0
|
|
C1D
|
E:HEM201
|
3.0
|
17.4
|
1.0
|
|
C4D
|
E:HEM201
|
3.0
|
17.1
|
1.0
|
|
C1C
|
E:HEM201
|
3.0
|
18.1
|
1.0
|
|
C1B
|
E:HEM201
|
3.1
|
17.2
|
1.0
|
|
C4C
|
E:HEM201
|
3.1
|
18.2
|
1.0
|
|
C4B
|
E:HEM201
|
3.1
|
17.0
|
1.0
|
|
C4A
|
E:HEM201
|
3.1
|
17.8
|
1.0
|
|
C1A
|
E:HEM201
|
3.1
|
16.3
|
1.0
|
|
CE
|
F:MET52
|
3.3
|
17.0
|
1.0
|
|
CE
|
E:MET52
|
3.3
|
17.4
|
1.0
|
|
CHC
|
E:HEM201
|
3.4
|
17.4
|
1.0
|
|
CHD
|
E:HEM201
|
3.4
|
15.9
|
1.0
|
|
CHB
|
E:HEM201
|
3.4
|
16.3
|
1.0
|
|
CHA
|
E:HEM201
|
3.4
|
18.1
|
1.0
|
|
CG
|
F:MET52
|
3.5
|
13.3
|
1.0
|
|
CG
|
E:MET52
|
3.5
|
14.2
|
1.0
|
|
C3D
|
E:HEM201
|
4.2
|
19.5
|
1.0
|
|
C2D
|
E:HEM201
|
4.3
|
19.9
|
1.0
|
|
C2C
|
E:HEM201
|
4.3
|
17.5
|
1.0
|
|
CB
|
F:MET52
|
4.3
|
12.4
|
1.0
|
|
C3B
|
E:HEM201
|
4.3
|
17.8
|
1.0
|
|
C2B
|
E:HEM201
|
4.3
|
15.9
|
1.0
|
|
C3C
|
E:HEM201
|
4.3
|
18.3
|
1.0
|
|
C2A
|
E:HEM201
|
4.3
|
18.4
|
1.0
|
|
C3A
|
E:HEM201
|
4.3
|
17.4
|
1.0
|
|
CB
|
E:MET52
|
4.3
|
14.3
|
1.0
|
|
Iron binding site 4 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 4 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:16.7
occ:1.00
|
FE
|
G:HEM201
|
0.0
|
16.7
|
1.0
|
|
NC
|
G:HEM201
|
2.0
|
16.2
|
1.0
|
|
ND
|
G:HEM201
|
2.0
|
16.8
|
1.0
|
|
NB
|
G:HEM201
|
2.0
|
16.8
|
1.0
|
|
NA
|
G:HEM201
|
2.0
|
15.9
|
1.0
|
|
SD
|
H:MET52
|
2.3
|
15.2
|
1.0
|
|
SD
|
G:MET52
|
2.3
|
15.4
|
1.0
|
|
C1D
|
G:HEM201
|
3.0
|
16.6
|
1.0
|
|
C1B
|
G:HEM201
|
3.0
|
17.0
|
1.0
|
|
C4C
|
G:HEM201
|
3.1
|
16.8
|
1.0
|
|
C1C
|
G:HEM201
|
3.1
|
18.3
|
1.0
|
|
C1A
|
G:HEM201
|
3.1
|
17.4
|
1.0
|
|
C4D
|
G:HEM201
|
3.1
|
19.2
|
1.0
|
|
C4B
|
G:HEM201
|
3.1
|
17.9
|
1.0
|
|
C4A
|
G:HEM201
|
3.1
|
15.1
|
1.0
|
|
CE
|
H:MET52
|
3.3
|
16.5
|
1.0
|
|
CE
|
G:MET52
|
3.3
|
18.4
|
1.0
|
|
CHC
|
G:HEM201
|
3.4
|
16.7
|
1.0
|
|
CHA
|
G:HEM201
|
3.4
|
15.9
|
1.0
|
|
CHD
|
G:HEM201
|
3.4
|
17.9
|
1.0
|
|
CHB
|
G:HEM201
|
3.4
|
16.9
|
1.0
|
|
CG
|
H:MET52
|
3.5
|
13.0
|
1.0
|
|
CG
|
G:MET52
|
3.5
|
15.4
|
1.0
|
|
CB
|
H:MET52
|
4.2
|
11.7
|
1.0
|
|
C2A
|
G:HEM201
|
4.3
|
18.9
|
1.0
|
|
C3D
|
G:HEM201
|
4.3
|
16.6
|
1.0
|
|
C2D
|
G:HEM201
|
4.3
|
14.6
|
1.0
|
|
C3B
|
G:HEM201
|
4.3
|
18.6
|
1.0
|
|
C3A
|
G:HEM201
|
4.3
|
18.1
|
1.0
|
|
C2C
|
G:HEM201
|
4.3
|
18.7
|
1.0
|
|
C2B
|
G:HEM201
|
4.3
|
16.7
|
1.0
|
|
CB
|
G:MET52
|
4.3
|
12.2
|
1.0
|
|
C3C
|
G:HEM201
|
4.3
|
17.1
|
1.0
|
|
Iron binding site 5 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 5 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Fe203
b:17.8
occ:1.00
|
FE
|
I:HEM203
|
0.0
|
17.8
|
1.0
|
|
NC
|
I:HEM203
|
2.0
|
16.2
|
1.0
|
|
NB
|
I:HEM203
|
2.0
|
17.4
|
1.0
|
|
ND
|
I:HEM203
|
2.0
|
16.7
|
1.0
|
|
NA
|
I:HEM203
|
2.1
|
15.8
|
1.0
|
|
SD
|
I:MET52
|
2.3
|
16.8
|
1.0
|
|
SD
|
J:MET52
|
2.3
|
15.4
|
1.0
|
|
C1D
|
I:HEM203
|
3.0
|
16.7
|
1.0
|
|
C1C
|
I:HEM203
|
3.0
|
20.7
|
1.0
|
|
C4C
|
I:HEM203
|
3.1
|
20.1
|
1.0
|
|
C4B
|
I:HEM203
|
3.1
|
22.2
|
1.0
|
|
C4D
|
I:HEM203
|
3.1
|
18.4
|
1.0
|
|
C1A
|
I:HEM203
|
3.1
|
18.7
|
1.0
|
|
C4A
|
I:HEM203
|
3.1
|
20.1
|
1.0
|
|
C1B
|
I:HEM203
|
3.1
|
17.8
|
1.0
|
|
CE
|
I:MET52
|
3.2
|
19.9
|
1.0
|
|
CE
|
J:MET52
|
3.3
|
15.8
|
1.0
|
|
CHD
|
I:HEM203
|
3.4
|
17.9
|
1.0
|
|
CHC
|
I:HEM203
|
3.4
|
19.3
|
1.0
|
|
CHA
|
I:HEM203
|
3.4
|
17.6
|
1.0
|
|
CHB
|
I:HEM203
|
3.5
|
17.4
|
1.0
|
|
CG
|
J:MET52
|
3.5
|
12.6
|
1.0
|
|
CG
|
I:MET52
|
3.5
|
13.9
|
1.0
|
|
CB
|
J:MET52
|
4.2
|
16.0
|
1.0
|
|
C2D
|
I:HEM203
|
4.3
|
18.4
|
1.0
|
|
C3D
|
I:HEM203
|
4.3
|
19.1
|
1.0
|
|
C2C
|
I:HEM203
|
4.3
|
19.9
|
1.0
|
|
C3C
|
I:HEM203
|
4.3
|
18.8
|
1.0
|
|
C2A
|
I:HEM203
|
4.3
|
19.8
|
1.0
|
|
C3B
|
I:HEM203
|
4.3
|
19.9
|
1.0
|
|
C3A
|
I:HEM203
|
4.3
|
20.4
|
1.0
|
|
CB
|
I:MET52
|
4.3
|
15.9
|
1.0
|
|
C2B
|
I:HEM203
|
4.3
|
19.4
|
1.0
|
|
Iron binding site 6 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 6 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
K:Fe201
b:16.6
occ:1.00
|
FE
|
K:HEM201
|
0.0
|
16.6
|
1.0
|
|
NB
|
K:HEM201
|
2.0
|
16.1
|
1.0
|
|
NC
|
K:HEM201
|
2.0
|
14.4
|
1.0
|
|
ND
|
K:HEM201
|
2.0
|
16.7
|
1.0
|
|
NA
|
K:HEM201
|
2.0
|
15.1
|
1.0
|
|
SD
|
K:MET52
|
2.3
|
16.0
|
1.0
|
|
SD
|
L:MET52
|
2.4
|
15.8
|
1.0
|
|
C1B
|
K:HEM201
|
3.0
|
17.1
|
1.0
|
|
C1D
|
K:HEM201
|
3.0
|
20.6
|
1.0
|
|
C4C
|
K:HEM201
|
3.1
|
18.5
|
1.0
|
|
C4D
|
K:HEM201
|
3.1
|
18.7
|
1.0
|
|
C4B
|
K:HEM201
|
3.1
|
18.1
|
1.0
|
|
C1C
|
K:HEM201
|
3.1
|
19.1
|
1.0
|
|
C1A
|
K:HEM201
|
3.1
|
17.1
|
1.0
|
|
C4A
|
K:HEM201
|
3.1
|
16.8
|
1.0
|
|
CE
|
K:MET52
|
3.3
|
16.9
|
1.0
|
|
CE
|
L:MET52
|
3.3
|
15.9
|
1.0
|
|
CHD
|
K:HEM201
|
3.4
|
18.0
|
1.0
|
|
CHA
|
K:HEM201
|
3.4
|
17.1
|
1.0
|
|
CHB
|
K:HEM201
|
3.4
|
15.8
|
1.0
|
|
CHC
|
K:HEM201
|
3.4
|
19.1
|
1.0
|
|
CG
|
K:MET52
|
3.5
|
13.8
|
1.0
|
|
CG
|
L:MET52
|
3.5
|
12.7
|
1.0
|
|
C2B
|
K:HEM201
|
4.3
|
16.2
|
1.0
|
|
CB
|
K:MET52
|
4.3
|
13.6
|
1.0
|
|
C2D
|
K:HEM201
|
4.3
|
15.2
|
1.0
|
|
C3B
|
K:HEM201
|
4.3
|
16.9
|
1.0
|
|
C3D
|
K:HEM201
|
4.3
|
16.1
|
1.0
|
|
C3C
|
K:HEM201
|
4.3
|
19.4
|
1.0
|
|
C2C
|
K:HEM201
|
4.3
|
21.1
|
1.0
|
|
CB
|
L:MET52
|
4.3
|
13.2
|
1.0
|
|
C2A
|
K:HEM201
|
4.3
|
18.3
|
1.0
|
|
C3A
|
K:HEM201
|
4.3
|
16.0
|
1.0
|
|
Iron binding site 7 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 7 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
M:Fe201
b:14.7
occ:1.00
|
FE
|
M:HEM201
|
0.0
|
14.7
|
1.0
|
|
ND
|
M:HEM201
|
2.0
|
15.7
|
1.0
|
|
NC
|
M:HEM201
|
2.0
|
14.1
|
1.0
|
|
NA
|
M:HEM201
|
2.0
|
14.2
|
1.0
|
|
NB
|
M:HEM201
|
2.0
|
15.0
|
1.0
|
|
SD
|
N:MET52
|
2.3
|
13.5
|
1.0
|
|
SD
|
M:MET52
|
2.3
|
13.6
|
1.0
|
|
C4D
|
M:HEM201
|
3.0
|
15.1
|
1.0
|
|
C1A
|
M:HEM201
|
3.0
|
16.1
|
1.0
|
|
C4C
|
M:HEM201
|
3.1
|
14.8
|
1.0
|
|
C1B
|
M:HEM201
|
3.1
|
15.3
|
1.0
|
|
C1C
|
M:HEM201
|
3.1
|
13.8
|
1.0
|
|
C4A
|
M:HEM201
|
3.1
|
14.1
|
1.0
|
|
C1D
|
M:HEM201
|
3.1
|
15.0
|
1.0
|
|
C4B
|
M:HEM201
|
3.1
|
14.8
|
1.0
|
|
CE
|
N:MET52
|
3.3
|
14.5
|
1.0
|
|
CE
|
M:MET52
|
3.3
|
16.2
|
1.0
|
|
CHA
|
M:HEM201
|
3.4
|
14.9
|
1.0
|
|
CHB
|
M:HEM201
|
3.4
|
13.7
|
1.0
|
|
CHD
|
M:HEM201
|
3.4
|
14.8
|
1.0
|
|
CHC
|
M:HEM201
|
3.4
|
17.1
|
1.0
|
|
CG
|
M:MET52
|
3.5
|
12.7
|
1.0
|
|
CG
|
N:MET52
|
3.5
|
11.4
|
1.0
|
|
CB
|
N:MET52
|
4.2
|
11.9
|
1.0
|
|
C2A
|
M:HEM201
|
4.2
|
16.6
|
1.0
|
|
C3D
|
M:HEM201
|
4.3
|
14.8
|
1.0
|
|
CB
|
M:MET52
|
4.3
|
12.7
|
1.0
|
|
C3A
|
M:HEM201
|
4.3
|
13.7
|
1.0
|
|
C2D
|
M:HEM201
|
4.3
|
13.6
|
1.0
|
|
C2C
|
M:HEM201
|
4.3
|
16.5
|
1.0
|
|
C3C
|
M:HEM201
|
4.3
|
16.5
|
1.0
|
|
C2B
|
M:HEM201
|
4.3
|
16.5
|
1.0
|
|
C3B
|
M:HEM201
|
4.3
|
16.0
|
1.0
|
|
Iron binding site 8 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 8 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
O:Fe202
b:17.7
occ:1.00
|
FE
|
O:HEM202
|
0.0
|
17.7
|
1.0
|
|
NC
|
O:HEM202
|
2.0
|
15.7
|
1.0
|
|
NA
|
O:HEM202
|
2.0
|
17.3
|
1.0
|
|
NB
|
O:HEM202
|
2.0
|
17.4
|
1.0
|
|
ND
|
O:HEM202
|
2.1
|
16.1
|
1.0
|
|
SD
|
P:MET52
|
2.3
|
15.8
|
1.0
|
|
SD
|
O:MET52
|
2.4
|
15.8
|
1.0
|
|
C1A
|
O:HEM202
|
3.0
|
19.1
|
1.0
|
|
C1C
|
O:HEM202
|
3.0
|
17.9
|
1.0
|
|
C4B
|
O:HEM202
|
3.0
|
17.4
|
1.0
|
|
C4C
|
O:HEM202
|
3.1
|
17.7
|
1.0
|
|
C1D
|
O:HEM202
|
3.1
|
17.7
|
1.0
|
|
C4D
|
O:HEM202
|
3.1
|
18.9
|
1.0
|
|
C4A
|
O:HEM202
|
3.1
|
17.9
|
1.0
|
|
C1B
|
O:HEM202
|
3.1
|
19.9
|
1.0
|
|
CE
|
P:MET52
|
3.2
|
16.9
|
1.0
|
|
CE
|
O:MET52
|
3.4
|
17.0
|
1.0
|
|
CHA
|
O:HEM202
|
3.4
|
17.7
|
1.0
|
|
CHC
|
O:HEM202
|
3.4
|
19.1
|
1.0
|
|
CHD
|
O:HEM202
|
3.4
|
16.8
|
1.0
|
|
CHB
|
O:HEM202
|
3.5
|
17.1
|
1.0
|
|
CG
|
P:MET52
|
3.5
|
13.3
|
1.0
|
|
CG
|
O:MET52
|
3.6
|
13.6
|
1.0
|
|
CB
|
P:MET52
|
4.2
|
15.2
|
1.0
|
|
CB
|
O:MET52
|
4.2
|
14.8
|
1.0
|
|
C2A
|
O:HEM202
|
4.3
|
18.0
|
1.0
|
|
C2C
|
O:HEM202
|
4.3
|
18.6
|
1.0
|
|
C3B
|
O:HEM202
|
4.3
|
18.2
|
1.0
|
|
C3C
|
O:HEM202
|
4.3
|
19.1
|
1.0
|
|
C2D
|
O:HEM202
|
4.3
|
16.9
|
1.0
|
|
C3D
|
O:HEM202
|
4.3
|
18.0
|
1.0
|
|
C3A
|
O:HEM202
|
4.3
|
18.9
|
1.0
|
|
C2B
|
O:HEM202
|
4.3
|
18.9
|
1.0
|
|
Iron binding site 9 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 9 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
Q:Fe201
b:15.1
occ:1.00
|
FE
|
Q:HEM201
|
0.0
|
15.1
|
1.0
|
|
NC
|
Q:HEM201
|
2.0
|
15.4
|
1.0
|
|
NB
|
Q:HEM201
|
2.0
|
14.9
|
1.0
|
|
ND
|
Q:HEM201
|
2.0
|
15.0
|
1.0
|
|
NA
|
Q:HEM201
|
2.0
|
15.9
|
1.0
|
|
SD
|
Q:MET52
|
2.3
|
14.1
|
1.0
|
|
SD
|
R:MET52
|
2.3
|
14.1
|
1.0
|
|
C1D
|
Q:HEM201
|
3.0
|
13.8
|
1.0
|
|
C1C
|
Q:HEM201
|
3.0
|
15.1
|
1.0
|
|
C1B
|
Q:HEM201
|
3.0
|
14.8
|
1.0
|
|
C4B
|
Q:HEM201
|
3.1
|
16.0
|
1.0
|
|
C4C
|
Q:HEM201
|
3.1
|
15.5
|
1.0
|
|
C4D
|
Q:HEM201
|
3.1
|
14.6
|
1.0
|
|
C1A
|
Q:HEM201
|
3.1
|
14.6
|
1.0
|
|
C4A
|
Q:HEM201
|
3.1
|
14.6
|
1.0
|
|
CE
|
Q:MET52
|
3.3
|
15.4
|
1.0
|
|
CE
|
R:MET52
|
3.3
|
16.4
|
1.0
|
|
CHC
|
Q:HEM201
|
3.4
|
17.8
|
1.0
|
|
CHD
|
Q:HEM201
|
3.4
|
13.8
|
1.0
|
|
CHA
|
Q:HEM201
|
3.4
|
15.3
|
1.0
|
|
CHB
|
Q:HEM201
|
3.5
|
16.1
|
1.0
|
|
CG
|
Q:MET52
|
3.5
|
11.6
|
1.0
|
|
CG
|
R:MET52
|
3.5
|
14.7
|
1.0
|
|
CB
|
Q:MET52
|
4.2
|
11.0
|
1.0
|
|
C2C
|
Q:HEM201
|
4.3
|
15.7
|
1.0
|
|
CB
|
R:MET52
|
4.3
|
11.6
|
1.0
|
|
C2D
|
Q:HEM201
|
4.3
|
17.4
|
1.0
|
|
C3B
|
Q:HEM201
|
4.3
|
16.6
|
1.0
|
|
C2B
|
Q:HEM201
|
4.3
|
14.6
|
1.0
|
|
C3D
|
Q:HEM201
|
4.3
|
17.5
|
1.0
|
|
C2A
|
Q:HEM201
|
4.3
|
16.0
|
1.0
|
|
C3C
|
Q:HEM201
|
4.3
|
15.4
|
1.0
|
|
C3A
|
Q:HEM201
|
4.3
|
14.8
|
1.0
|
|
Iron binding site 10 out
of 12 in 5d8x
Go back to
Iron Binding Sites List in 5d8x
Iron binding site 10 out
of 12 in the 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of 1.50A Resolution Structure of Bfrb (L68A E81A) From Pseudomonas Aeruginosa within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe204
b:14.8
occ:1.00
|
FE
|
S:HEM204
|
0.0
|
14.8
|
1.0
|
|
NC
|
S:HEM204
|
2.0
|
15.2
|
1.0
|
|
ND
|
S:HEM204
|
2.0
|
14.9
|
1.0
|
|
NB
|
S:HEM204
|
2.0
|
15.1
|
1.0
|
|
NA
|
S:HEM204
|
2.1
|
13.7
|
1.0
|
|
SD
|
T:MET52
|
2.3
|
13.4
|
1.0
|
|
SD
|
S:MET52
|
2.3
|
13.9
|
1.0
|
|
C1C
|
S:HEM204
|
3.0
|
17.4
|
1.0
|
|
C4C
|
S:HEM204
|
3.0
|
15.3
|
1.0
|
|
C4D
|
S:HEM204
|
3.1
|
13.9
|
1.0
|
|
C1D
|
S:HEM204
|
3.1
|
16.8
|
1.0
|
|
C4A
|
S:HEM204
|
3.1
|
14.7
|
1.0
|
|
C1B
|
S:HEM204
|
3.1
|
15.1
|
1.0
|
|
C1A
|
S:HEM204
|
3.1
|
15.0
|
1.0
|
|
C4B
|
S:HEM204
|
3.1
|
15.4
|
1.0
|
|
CE
|
T:MET52
|
3.3
|
18.2
|
1.0
|
|
CE
|
S:MET52
|
3.3
|
16.1
|
1.0
|
|
CHA
|
S:HEM204
|
3.4
|
13.4
|
1.0
|
|
CHC
|
S:HEM204
|
3.4
|
15.3
|
1.0
|
|
CHD
|
S:HEM204
|
3.4
|
16.1
|
1.0
|
|
CHB
|
S:HEM204
|
3.4
|
16.6
|
1.0
|
|
CG
|
T:MET52
|
3.5
|
12.1
|
1.0
|
|
CG
|
S:MET52
|
3.6
|
12.1
|
1.0
|
|
C3D
|
S:HEM204
|
4.3
|
15.6
|
1.0
|
|
C2C
|
S:HEM204
|
4.3
|
14.7
|
1.0
|
|
CB
|
T:MET52
|
4.3
|
11.6
|
1.0
|
|
C3A
|
S:HEM204
|
4.3
|
16.4
|
1.0
|
|
C2A
|
S:HEM204
|
4.3
|
18.1
|
1.0
|
|
C2D
|
S:HEM204
|
4.3
|
16.3
|
1.0
|
|
C3C
|
S:HEM204
|
4.3
|
14.8
|
1.0
|
|
CB
|
S:MET52
|
4.3
|
11.0
|
1.0
|
|
C3B
|
S:HEM204
|
4.3
|
15.6
|
1.0
|
|
C2B
|
S:HEM204
|
4.3
|
15.1
|
1.0
|
|
Reference:
Y.Wang,
H.Yao,
Y.Cheng,
S.Lovell,
K.P.Battaile,
C.R.Midaugh,
M.Rivera.
Characterization of the Bacterioferritin/Bacterioferritin Associated Ferredoxin Protein-Protein Interaction in Solution and Determination of Binding Energy Hot Spots. Biochemistry V. 54 6162 2015.
ISSN: ISSN 0006-2960
PubMed: 26368531
DOI: 10.1021/ACS.BIOCHEM.5B00937
Page generated: Mon Aug 5 21:58:40 2024
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