Iron in PDB 5df5: The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.

The structure of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution., PDB code: 5df5 was solved by B.F.P.Edwards, G.Mahapatra, A.A.Vaishnav, J.S.Brunzelle, M.Huttemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.88 / 1.30
Space group	P 1
Cell size a, b, c (Å), α, β, γ (°)	34.609, 51.739, 61.748, 110.01, 93.09, 91.88
R / Rfree (%)	14.8 / 17.8

The binding sites of Iron atom in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. (pdb code 5df5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 7 binding sites of Iron where determined in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution., PDB code: 5df5:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7;

Iron binding site 1 out of 7 in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe201 b:11.3 occ:1.00 FE A:HEC201 0.0 11.3 1.0 ND A:HEC201 2.0 10.7 1.0 NE2 A:HIS18 2.0 10.3 1.0 NA A:HEC201 2.0 10.4 1.0 NB A:HEC201 2.0 11.0 1.0 NC A:HEC201 2.0 11.3 1.0 SD A:MET80 2.3 12.0 1.0 CE1 A:HIS18 2.9 11.6 1.0 C1D A:HEC201 3.0 10.6 1.0 C1B A:HEC201 3.0 10.2 1.0 C4A A:HEC201 3.0 10.4 1.0 C4C A:HEC201 3.0 10.9 1.0 C4D A:HEC201 3.1 9.9 1.0 C4B A:HEC201 3.1 11.2 1.0 C1A A:HEC201 3.1 9.1 1.0 CD2 A:HIS18 3.1 10.2 1.0 C1C A:HEC201 3.1 11.5 1.0 CE A:MET80 3.4 12.9 1.0 CG A:MET80 3.4 11.5 1.0 CHA A:HEC201 3.4 10.6 1.0 CHB A:HEC201 3.4 9.7 1.0 CHD A:HEC201 3.4 10.3 1.0 CHC A:HEC201 3.5 10.7 1.0 ND1 A:HIS18 4.1 9.8 1.0 CG A:HIS18 4.2 9.5 1.0 CB A:MET80 4.2 11.6 1.0 C2A A:HEC201 4.2 9.8 1.0 C3B A:HEC201 4.2 10.5 1.0 C3D A:HEC201 4.2 9.8 1.0 C2B A:HEC201 4.3 10.5 1.0 C2C A:HEC201 4.3 11.9 1.0 C3A A:HEC201 4.3 10.0 1.0 C3C A:HEC201 4.3 11.8 1.0 C2D A:HEC201 4.3 10.8 1.0 OH A:TYR67 4.7 18.0 1.0

Iron binding site 2 out of 7 in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:10.5 occ:1.00 FE B:HEC201 0.0 10.5 1.0 ND B:HEC201 2.0 9.6 1.0 NA B:HEC201 2.0 10.6 1.0 NE2 B:HIS18 2.0 11.3 1.0 NB B:HEC201 2.0 9.8 1.0 NC B:HEC201 2.0 10.1 1.0 SD B:MET80 2.3 11.0 1.0 CE1 B:HIS18 2.9 9.7 1.0 C1D B:HEC201 3.0 9.6 1.0 C1B B:HEC201 3.0 9.0 1.0 C1A B:HEC201 3.0 9.7 1.0 C4A B:HEC201 3.0 9.2 1.0 C4C B:HEC201 3.0 9.6 1.0 C4D B:HEC201 3.0 9.8 1.0 C1C B:HEC201 3.0 10.1 1.0 C4B B:HEC201 3.1 9.7 1.0 CD2 B:HIS18 3.1 9.1 1.0 CE B:MET80 3.3 11.3 1.0 CG B:MET80 3.4 10.3 1.0 CHB B:HEC201 3.4 9.9 1.0 CHA B:HEC201 3.4 9.3 1.0 CHD B:HEC201 3.4 9.3 1.0 CHC B:HEC201 3.5 9.4 1.0 ND1 B:HIS18 4.1 9.0 1.0 CG B:HIS18 4.1 9.2 1.0 C2A B:HEC201 4.2 9.7 1.0 C2C B:HEC201 4.2 10.5 1.0 CB B:MET80 4.2 10.2 1.0 C3A B:HEC201 4.2 9.3 1.0 C3D B:HEC201 4.2 9.2 1.0 C3C B:HEC201 4.2 9.8 1.0 C2B B:HEC201 4.3 9.7 1.0 C2D B:HEC201 4.3 9.2 1.0 C3B B:HEC201 4.3 9.4 1.0 OH B:TYR67 4.8 17.1 1.0

Iron binding site 3 out of 7 in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe202 b:18.7 occ:0.92 FE2 B:FC6202 0.0 18.7 0.9 C23 B:FC6202 1.8 19.9 0.9 C21 B:FC6202 1.8 20.8 0.9 C11 B:FC6202 1.8 20.4 0.9 C24 B:FC6202 1.8 19.8 0.9 C26 B:FC6202 1.9 19.8 0.9 C22 B:FC6202 1.9 17.7 0.9 N24 B:FC6202 3.0 22.2 0.9 N25 B:FC6202 3.0 20.7 0.9 N23 B:FC6202 3.0 21.1 0.9 N11 B:FC6202 3.0 21.3 0.9 N22 B:FC6202 3.0 19.4 0.9 N21 B:FC6202 3.0 19.0 0.9 N B:GLY89 4.4 17.7 1.0 CA B:GLY89 4.8 18.2 1.0 CB B:LYS87 4.9 20.1 1.0 CG B:LYS87 5.0 23.1 1.0 N B:LYS88 5.0 18.4 1.0

Iron binding site 4 out of 7 in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe203 b:13.2 occ:0.48 FE2 B:FC6203 0.0 13.2 0.5 C11 B:FC6203 1.8 15.9 0.5 C26 B:FC6203 1.8 13.6 0.5 C23 B:FC6203 1.8 15.2 0.5 C22 B:FC6203 1.8 14.7 0.5 C24 B:FC6203 1.8 12.4 0.5 C21 B:FC6203 1.9 14.1 0.5 N11 B:FC6203 3.0 20.6 0.5 N23 B:FC6203 3.0 15.1 0.5 N21 B:FC6203 3.0 13.8 0.5 N24 B:FC6203 3.0 11.6 0.5 N25 B:FC6203 3.0 14.8 0.5 N22 B:FC6203 3.0 13.9 0.5 NZ B:LYS8 4.6 30.9 1.0 CB B:GLU4 4.6 23.2 1.0

Iron binding site 5 out of 7 in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:11.7 occ:1.00 FE C:HEC201 0.0 11.7 1.0 ND C:HEC201 2.0 10.8 1.0 NA C:HEC201 2.0 10.8 1.0 NB C:HEC201 2.0 10.9 1.0 NE2 C:HIS18 2.0 11.6 1.0 NC C:HEC201 2.0 11.3 1.0 SD C:MET80 2.3 11.8 1.0 CE1 C:HIS18 2.9 11.2 1.0 C1D C:HEC201 3.0 11.6 1.0 C1B C:HEC201 3.0 11.2 1.0 C4B C:HEC201 3.0 11.8 1.0 C4D C:HEC201 3.0 10.3 1.0 C1A C:HEC201 3.0 9.8 1.0 C4C C:HEC201 3.0 10.5 1.0 C4A C:HEC201 3.0 10.5 1.0 C1C C:HEC201 3.0 11.2 1.0 CD2 C:HIS18 3.1 11.1 1.0 CE C:MET80 3.3 15.1 1.0 CHB C:HEC201 3.4 10.5 1.0 CG C:MET80 3.4 11.6 1.0 CHA C:HEC201 3.4 10.3 1.0 CHD C:HEC201 3.4 10.8 1.0 CHC C:HEC201 3.4 11.1 1.0 ND1 C:HIS18 4.1 11.1 1.0 CB C:MET80 4.2 11.8 1.0 CG C:HIS18 4.2 12.1 1.0 C2C C:HEC201 4.2 11.8 1.0 C2B C:HEC201 4.2 12.1 1.0 C2A C:HEC201 4.2 10.9 1.0 C3A C:HEC201 4.2 11.3 1.0 C2D C:HEC201 4.2 10.8 1.0 C3B C:HEC201 4.2 12.8 1.0 C3D C:HEC201 4.2 11.5 1.0 C3C C:HEC201 4.3 12.0 1.0 OH C:TYR67 4.6 19.9 1.0

Iron binding site 6 out of 7 in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe202 b:16.3 occ:0.89 FE2 C:FC6202 0.0 16.3 0.9 C24 C:FC6202 1.8 20.4 0.9 C23 C:FC6202 1.8 20.2 0.9 C21 C:FC6202 1.8 19.9 0.9 C22 C:FC6202 1.8 19.1 0.9 C11 C:FC6202 1.8 18.9 0.9 C26 C:FC6202 1.9 18.4 0.9 N24 C:FC6202 3.0 17.3 0.9 N23 C:FC6202 3.0 21.3 0.9 N25 C:FC6202 3.0 20.5 0.9 N11 C:FC6202 3.0 16.4 0.9 N22 C:FC6202 3.0 17.0 0.9 N21 C:FC6202 3.0 18.3 0.9 N C:LYS88 4.7 18.2 1.0 CB C:LYS88 4.9 19.8 1.0 CG C:LYS87 5.0 23.3 1.0

Iron binding site 7 out of 7 in the The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution.


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:13.0 occ:1.00 FE D:HEC201 0.0 13.0 1.0 ND D:HEC201 2.0 12.8 1.0 NA D:HEC201 2.0 12.0 1.0 NE2 D:HIS18 2.0 12.7 1.0 NB D:HEC201 2.0 12.5 1.0 NC D:HEC201 2.1 12.0 1.0 SD D:MET80 2.3 13.2 1.0 CE1 D:HIS18 2.9 12.9 1.0 C4D D:HEC201 3.0 12.0 1.0 C4B D:HEC201 3.0 11.5 1.0 C4A D:HEC201 3.0 11.6 1.0 C1D D:HEC201 3.0 12.8 1.0 C1B D:HEC201 3.0 11.2 1.0 C1A D:HEC201 3.0 12.4 1.0 C4C D:HEC201 3.0 11.8 1.0 C1C D:HEC201 3.1 12.3 1.0 CD2 D:HIS18 3.1 12.7 1.0 CE D:MET80 3.3 12.7 1.0 CHB D:HEC201 3.4 11.2 1.0 CG D:MET80 3.4 16.4 1.0 CHA D:HEC201 3.4 11.9 1.0 CHD D:HEC201 3.4 12.7 1.0 CHC D:HEC201 3.4 11.8 1.0 ND1 D:HIS18 4.1 13.9 1.0 CG D:HIS18 4.2 13.6 1.0 C3A D:HEC201 4.2 11.5 1.0 C2B D:HEC201 4.2 12.3 1.0 C2A D:HEC201 4.2 12.6 1.0 C3D D:HEC201 4.2 14.0 1.0 CB D:MET80 4.2 14.5 1.0 C2D D:HEC201 4.3 13.7 1.0 C3B D:HEC201 4.3 12.6 1.0 C3C D:HEC201 4.3 13.2 1.0 C2C D:HEC201 4.3 13.5 1.0 OH D:TYR67 4.7 20.9 1.0

B.F.P.Edwards, G.Mahapatra, A.A.Vaishnav, J.S.Brunzelle, M.Huttemann. The Structure of Oxidized Rat Cytochrome C (T28E) at 1.30 Angstroms Resolution. To Be Published.