Iron in PDB 5exq: Human Cytochrome C Y48H
Protein crystallography data
The structure of Human Cytochrome C Y48H, PDB code: 5exq
was solved by
M.Fellner,
G.N.L.Jameson,
E.C.Ledgerwood,
S.M.Wilbanks,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
54.04 /
1.60
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.791,
35.965,
59.937,
90.00,
115.63,
90.00
|
R / Rfree (%)
|
17.3 /
19.3
|
Iron Binding Sites:
The binding sites of Iron atom in the Human Cytochrome C Y48H
(pdb code 5exq). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the
Human Cytochrome C Y48H, PDB code: 5exq:
Jump to Iron binding site number:
1;
2;
Iron binding site 1 out
of 2 in 5exq
Go back to
Iron Binding Sites List in 5exq
Iron binding site 1 out
of 2 in the Human Cytochrome C Y48H
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Human Cytochrome C Y48H within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:8.7
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
8.7
|
1.0
|
NE2
|
A:HIS18
|
2.0
|
10.6
|
1.0
|
ND
|
A:HEM201
|
2.0
|
7.3
|
1.0
|
NA
|
A:HEM201
|
2.0
|
9.3
|
1.0
|
NB
|
A:HEM201
|
2.1
|
9.3
|
1.0
|
NC
|
A:HEM201
|
2.1
|
9.5
|
1.0
|
SD
|
A:MET80
|
2.2
|
8.4
|
1.0
|
CE1
|
A:HIS18
|
2.9
|
8.1
|
1.0
|
C1D
|
A:HEM201
|
3.0
|
10.3
|
1.0
|
C4C
|
A:HEM201
|
3.0
|
6.3
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
8.3
|
1.0
|
C4B
|
A:HEM201
|
3.1
|
9.0
|
1.0
|
CD2
|
A:HIS18
|
3.1
|
12.3
|
1.0
|
C1A
|
A:HEM201
|
3.1
|
8.8
|
1.0
|
C4D
|
A:HEM201
|
3.1
|
7.7
|
1.0
|
C1C
|
A:HEM201
|
3.1
|
7.7
|
1.0
|
C1B
|
A:HEM201
|
3.1
|
10.0
|
1.0
|
CE
|
A:MET80
|
3.3
|
9.3
|
1.0
|
CHD
|
A:HEM201
|
3.4
|
10.2
|
1.0
|
CG
|
A:MET80
|
3.4
|
6.0
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
7.8
|
1.0
|
CHB
|
A:HEM201
|
3.4
|
12.1
|
1.0
|
CHC
|
A:HEM201
|
3.4
|
10.4
|
1.0
|
ND1
|
A:HIS18
|
4.1
|
9.0
|
1.0
|
CG
|
A:HIS18
|
4.2
|
11.6
|
1.0
|
CB
|
A:MET80
|
4.2
|
10.1
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
10.1
|
1.0
|
C2D
|
A:HEM201
|
4.3
|
10.4
|
1.0
|
C3D
|
A:HEM201
|
4.3
|
7.1
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
11.1
|
1.0
|
C3A
|
A:HEM201
|
4.3
|
9.6
|
1.0
|
C2A
|
A:HEM201
|
4.3
|
10.7
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
11.2
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
7.9
|
1.0
|
OH
|
A:TYR67
|
4.9
|
14.7
|
1.0
|
|
Iron binding site 2 out
of 2 in 5exq
Go back to
Iron Binding Sites List in 5exq
Iron binding site 2 out
of 2 in the Human Cytochrome C Y48H
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Human Cytochrome C Y48H within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:8.5
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
8.5
|
1.0
|
NE2
|
B:HIS18
|
2.0
|
9.1
|
1.0
|
ND
|
B:HEM201
|
2.0
|
6.8
|
1.0
|
NA
|
B:HEM201
|
2.0
|
6.1
|
1.0
|
NB
|
B:HEM201
|
2.1
|
9.6
|
1.0
|
NC
|
B:HEM201
|
2.1
|
7.2
|
1.0
|
SD
|
B:MET80
|
2.3
|
8.8
|
1.0
|
CD2
|
B:HIS18
|
3.0
|
6.8
|
1.0
|
CE1
|
B:HIS18
|
3.0
|
8.1
|
1.0
|
C1D
|
B:HEM201
|
3.0
|
7.7
|
1.0
|
C4C
|
B:HEM201
|
3.0
|
7.0
|
1.0
|
C4A
|
B:HEM201
|
3.1
|
8.6
|
1.0
|
C4B
|
B:HEM201
|
3.1
|
7.2
|
1.0
|
C1A
|
B:HEM201
|
3.1
|
7.3
|
1.0
|
C4D
|
B:HEM201
|
3.1
|
7.8
|
1.0
|
C1C
|
B:HEM201
|
3.1
|
9.2
|
1.0
|
C1B
|
B:HEM201
|
3.1
|
8.0
|
1.0
|
CE
|
B:MET80
|
3.3
|
9.8
|
1.0
|
CG
|
B:MET80
|
3.3
|
7.1
|
1.0
|
CHD
|
B:HEM201
|
3.4
|
7.2
|
1.0
|
CHA
|
B:HEM201
|
3.4
|
6.9
|
1.0
|
CHB
|
B:HEM201
|
3.4
|
7.7
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
9.3
|
1.0
|
ND1
|
B:HIS18
|
4.1
|
7.9
|
1.0
|
CG
|
B:HIS18
|
4.1
|
8.3
|
1.0
|
CB
|
B:MET80
|
4.2
|
8.7
|
1.0
|
C3B
|
B:HEM201
|
4.3
|
8.3
|
1.0
|
C2D
|
B:HEM201
|
4.3
|
9.1
|
1.0
|
C3D
|
B:HEM201
|
4.3
|
8.1
|
1.0
|
C3C
|
B:HEM201
|
4.3
|
10.1
|
1.0
|
C3A
|
B:HEM201
|
4.3
|
9.5
|
1.0
|
C2A
|
B:HEM201
|
4.3
|
9.0
|
1.0
|
C2C
|
B:HEM201
|
4.3
|
10.6
|
1.0
|
C2B
|
B:HEM201
|
4.3
|
10.6
|
1.0
|
OH
|
B:TYR67
|
4.9
|
13.7
|
1.0
|
|
Reference:
S.M.Wilbanks,
M.Fellner,
G.N.L.Jameson,
E.C.Ledgerwood,
S.M.Wilbanks.
N/A N/A.
Page generated: Tue Aug 6 00:37:01 2024
|