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Iron in PDB 5exq: Human Cytochrome C Y48H

Protein crystallography data

The structure of Human Cytochrome C Y48H, PDB code: 5exq was solved by M.Fellner, G.N.L.Jameson, E.C.Ledgerwood, S.M.Wilbanks, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 54.04 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.791, 35.965, 59.937, 90.00, 115.63, 90.00
R / Rfree (%) 17.3 / 19.3

Iron Binding Sites:

The binding sites of Iron atom in the Human Cytochrome C Y48H (pdb code 5exq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Human Cytochrome C Y48H, PDB code: 5exq:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5exq

Go back to Iron Binding Sites List in 5exq
Iron binding site 1 out of 2 in the Human Cytochrome C Y48H


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Human Cytochrome C Y48H within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:8.7
occ:1.00
FE A:HEM201 0.0 8.7 1.0
NE2 A:HIS18 2.0 10.6 1.0
ND A:HEM201 2.0 7.3 1.0
NA A:HEM201 2.0 9.3 1.0
NB A:HEM201 2.1 9.3 1.0
NC A:HEM201 2.1 9.5 1.0
SD A:MET80 2.2 8.4 1.0
CE1 A:HIS18 2.9 8.1 1.0
C1D A:HEM201 3.0 10.3 1.0
C4C A:HEM201 3.0 6.3 1.0
C4A A:HEM201 3.1 8.3 1.0
C4B A:HEM201 3.1 9.0 1.0
CD2 A:HIS18 3.1 12.3 1.0
C1A A:HEM201 3.1 8.8 1.0
C4D A:HEM201 3.1 7.7 1.0
C1C A:HEM201 3.1 7.7 1.0
C1B A:HEM201 3.1 10.0 1.0
CE A:MET80 3.3 9.3 1.0
CHD A:HEM201 3.4 10.2 1.0
CG A:MET80 3.4 6.0 1.0
CHA A:HEM201 3.4 7.8 1.0
CHB A:HEM201 3.4 12.1 1.0
CHC A:HEM201 3.4 10.4 1.0
ND1 A:HIS18 4.1 9.0 1.0
CG A:HIS18 4.2 11.6 1.0
CB A:MET80 4.2 10.1 1.0
C3B A:HEM201 4.3 10.1 1.0
C2D A:HEM201 4.3 10.4 1.0
C3D A:HEM201 4.3 7.1 1.0
C3C A:HEM201 4.3 11.1 1.0
C3A A:HEM201 4.3 9.6 1.0
C2A A:HEM201 4.3 10.7 1.0
C2C A:HEM201 4.3 11.2 1.0
C2B A:HEM201 4.3 7.9 1.0
OH A:TYR67 4.9 14.7 1.0

Iron binding site 2 out of 2 in 5exq

Go back to Iron Binding Sites List in 5exq
Iron binding site 2 out of 2 in the Human Cytochrome C Y48H


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Human Cytochrome C Y48H within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:8.5
occ:1.00
FE B:HEM201 0.0 8.5 1.0
NE2 B:HIS18 2.0 9.1 1.0
ND B:HEM201 2.0 6.8 1.0
NA B:HEM201 2.0 6.1 1.0
NB B:HEM201 2.1 9.6 1.0
NC B:HEM201 2.1 7.2 1.0
SD B:MET80 2.3 8.8 1.0
CD2 B:HIS18 3.0 6.8 1.0
CE1 B:HIS18 3.0 8.1 1.0
C1D B:HEM201 3.0 7.7 1.0
C4C B:HEM201 3.0 7.0 1.0
C4A B:HEM201 3.1 8.6 1.0
C4B B:HEM201 3.1 7.2 1.0
C1A B:HEM201 3.1 7.3 1.0
C4D B:HEM201 3.1 7.8 1.0
C1C B:HEM201 3.1 9.2 1.0
C1B B:HEM201 3.1 8.0 1.0
CE B:MET80 3.3 9.8 1.0
CG B:MET80 3.3 7.1 1.0
CHD B:HEM201 3.4 7.2 1.0
CHA B:HEM201 3.4 6.9 1.0
CHB B:HEM201 3.4 7.7 1.0
CHC B:HEM201 3.4 9.3 1.0
ND1 B:HIS18 4.1 7.9 1.0
CG B:HIS18 4.1 8.3 1.0
CB B:MET80 4.2 8.7 1.0
C3B B:HEM201 4.3 8.3 1.0
C2D B:HEM201 4.3 9.1 1.0
C3D B:HEM201 4.3 8.1 1.0
C3C B:HEM201 4.3 10.1 1.0
C3A B:HEM201 4.3 9.5 1.0
C2A B:HEM201 4.3 9.0 1.0
C2C B:HEM201 4.3 10.6 1.0
C2B B:HEM201 4.3 10.6 1.0
OH B:TYR67 4.9 13.7 1.0

Reference:

S.M.Wilbanks, M.Fellner, G.N.L.Jameson, E.C.Ledgerwood, S.M.Wilbanks. N/A N/A.
Page generated: Tue Aug 6 00:37:01 2024

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