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Iron in PDB 5fuj: Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula

Enzymatic activity of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula

All present enzymatic activity of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula:
1.11.2.1;

Protein crystallography data

The structure of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula, PDB code: 5fuj was solved by K.Piontek, E.Strittmatter, D.A.Plattner, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.77 / 1.83
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.495, 75.698, 104.430, 90.00, 90.00, 90.00
R / Rfree (%) 15.453 / 18.975

Other elements in 5fuj:

The structure of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula (pdb code 5fuj). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula, PDB code: 5fuj:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5fuj

Go back to Iron Binding Sites List in 5fuj
Iron binding site 1 out of 2 in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe350

b:15.0
occ:1.00
FE A:HEM350 0.0 15.0 1.0
ND A:HEM350 1.9 15.0 1.0
O A:ACT351 1.9 19.8 1.0
NA A:HEM350 2.0 16.8 1.0
NB A:HEM350 2.1 16.3 1.0
NC A:HEM350 2.1 16.9 1.0
SG A:CYS17 2.3 15.1 1.0
C4D A:HEM350 2.9 13.8 1.0
C1D A:HEM350 2.9 15.0 1.0
C1A A:HEM350 3.0 14.7 1.0
C A:ACT351 3.0 24.5 1.0
C4B A:HEM350 3.1 14.5 1.0
C4C A:HEM350 3.1 12.3 1.0
C1B A:HEM350 3.1 14.5 1.0
C1C A:HEM350 3.1 13.7 1.0
C4A A:HEM350 3.1 13.1 1.0
CB A:CYS17 3.4 16.0 1.0
CHA A:HEM350 3.4 14.6 1.0
CHD A:HEM350 3.4 13.5 1.0
CHC A:HEM350 3.5 13.7 1.0
CHB A:HEM350 3.5 13.0 1.0
CH3 A:ACT351 3.8 26.4 1.0
OXT A:ACT351 3.9 22.8 1.0
C3D A:HEM350 4.2 13.5 1.0
C2D A:HEM350 4.2 16.3 1.0
C2A A:HEM350 4.2 14.1 1.0
C3A A:HEM350 4.3 13.6 1.0
C3C A:HEM350 4.3 14.6 1.0
C2C A:HEM350 4.3 15.8 1.0
CA A:CYS17 4.3 16.6 1.0
C2B A:HEM350 4.3 14.0 1.0
C3B A:HEM350 4.3 14.7 1.0
OE2 A:GLU157 4.8 16.7 1.0
CG A:GLU157 4.8 16.1 1.0
N A:GLY19 5.0 14.6 1.0

Iron binding site 2 out of 2 in 5fuj

Go back to Iron Binding Sites List in 5fuj
Iron binding site 2 out of 2 in the Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystallization of A Dimeric Heme Peroxygenase From the Fungus Marasmius Rotula within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe350

b:14.2
occ:1.00
FE B:HEM350 0.0 14.2 1.0
O B:ACT351 1.9 17.6 1.0
ND B:HEM350 1.9 13.4 1.0
NA B:HEM350 2.0 14.2 1.0
NC B:HEM350 2.1 14.0 1.0
NB B:HEM350 2.1 13.7 1.0
SG B:CYS17 2.3 15.0 1.0
C4D B:HEM350 2.9 14.0 1.0
C1D B:HEM350 2.9 14.4 1.0
C1A B:HEM350 3.0 14.6 1.0
C B:ACT351 3.0 27.2 1.0
C4B B:HEM350 3.0 16.1 1.0
C4A B:HEM350 3.1 12.9 1.0
C4C B:HEM350 3.1 15.0 1.0
C1B B:HEM350 3.1 13.1 1.0
C1C B:HEM350 3.1 14.6 1.0
CB B:CYS17 3.4 15.2 1.0
CHA B:HEM350 3.4 11.9 1.0
CHD B:HEM350 3.4 14.4 1.0
CHC B:HEM350 3.5 13.6 1.0
CHB B:HEM350 3.5 13.8 1.0
CH3 B:ACT351 3.9 27.7 1.0
OXT B:ACT351 3.9 21.9 1.0
C3D B:HEM350 4.2 13.6 1.0
C2D B:HEM350 4.2 13.2 1.0
C2A B:HEM350 4.2 12.8 1.0
C3A B:HEM350 4.2 12.9 1.0
C2C B:HEM350 4.3 13.4 1.0
C3C B:HEM350 4.3 13.0 1.0
CA B:CYS17 4.3 14.5 1.0
C2B B:HEM350 4.3 14.7 1.0
C3B B:HEM350 4.3 16.4 1.0
OE2 B:GLU157 4.8 17.6 1.0
CG B:GLU157 4.9 14.6 1.0
N B:GLY19 4.9 14.1 1.0
C B:CYS17 5.0 14.1 1.0

Reference:

K.Piontek, E.Strittmatter, D.A.Plattner. Crystallization of A Dimeric Heme Peroxygenase To Be Published.
Page generated: Tue Aug 6 01:19:32 2024

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