Atomistry » Iron » PDB 5fp4-5g6e » 5g5g
Atomistry »
  Iron »
    PDB 5fp4-5g6e »
      5g5g »

Iron in PDB 5g5g: Escherichia Coli Periplasmic Aldehyde Oxidase

Protein crystallography data

The structure of Escherichia Coli Periplasmic Aldehyde Oxidase, PDB code: 5g5g was solved by M.A.S.Correia, A.R.Otrelo-Cardoso, M.J.Romao, T.Santos-Silva, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.32 / 1.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 109.681, 78.342, 151.909, 90.00, 99.69, 90.00
R / Rfree (%) 13.8 / 16.7

Other elements in 5g5g:

The structure of Escherichia Coli Periplasmic Aldehyde Oxidase also contains other interesting chemical elements:

Molybdenum (Mo) 1 atom
Iodine (I) 7 atoms
Chlorine (Cl) 12 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Escherichia Coli Periplasmic Aldehyde Oxidase (pdb code 5g5g). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Escherichia Coli Periplasmic Aldehyde Oxidase, PDB code: 5g5g:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 1 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe230

b:10.6
occ:1.00
FE1 A:FES230 0.0 10.6 1.0
SG A:CYS161 2.2 11.2 1.0
SG A:CYS208 2.2 10.1 1.0
S2 A:FES230 2.2 11.1 1.0
S1 A:FES230 2.2 11.6 1.0
CB A:CYS208 3.1 10.2 1.0
FE2 A:FES230 3.1 10.3 1.0
CB A:CYS161 3.3 10.3 1.0
CA A:CYS208 3.4 10.0 1.0
O A:HOH2122 4.1 11.3 1.0
C A:CYS208 4.2 10.3 1.0
N A:CYS161 4.2 10.0 1.0
N A:ARG209 4.3 9.9 1.0
CA A:CYS161 4.3 10.6 1.0
CB A:CYS210 4.4 10.0 1.0
N A:CYS210 4.5 9.4 1.0
SG A:CYS210 4.5 10.0 1.0
O A:ILE207 4.6 10.9 1.0
N A:CYS208 4.6 10.6 1.0
C A:CYS161 4.9 10.0 1.0
SG A:CYS158 4.9 9.8 1.0
O A:CYS208 5.0 9.7 1.0
CA A:CYS210 5.0 9.6 1.0
NE2 A:GLN165 5.0 11.1 1.0

Iron binding site 2 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 2 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe230

b:10.3
occ:1.00
FE2 A:FES230 0.0 10.3 1.0
SG A:CYS158 2.2 9.8 1.0
SG A:CYS210 2.2 10.0 1.0
S1 A:FES230 2.2 11.6 1.0
S2 A:FES230 2.2 11.1 1.0
FE1 A:FES230 3.1 10.6 1.0
CB A:CYS158 3.1 10.1 1.0
CB A:CYS210 3.4 10.0 1.0
N A:CYS158 3.4 9.9 1.0
O A:HOH2126 3.6 10.2 1.0
CA A:CYS158 3.7 9.9 1.0
N A:GLY159 3.9 9.5 1.0
N A:CYS210 4.1 9.4 1.0
C A:CYS158 4.2 9.8 1.0
CA A:CYS210 4.3 9.6 1.0
N A:TYR160 4.3 9.5 1.0
SG A:CYS208 4.5 10.1 1.0
C A:GLN157 4.6 10.3 1.0
N A:GLN157 4.8 10.1 1.0
CB A:GLN157 4.8 10.9 1.0
N A:CYS161 4.8 10.0 1.0
SG A:CYS161 4.9 11.2 1.0
CA A:GLN157 5.0 10.5 1.0
CA A:GLY159 5.0 9.9 1.0

Iron binding site 3 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 3 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe231

b:10.6
occ:1.00
FE1 A:FES231 0.0 10.6 1.0
S2 A:FES231 2.2 9.8 1.0
S1 A:FES231 2.2 9.7 1.0
SG A:CYS107 2.3 12.3 1.0
SG A:CYS119 2.3 11.4 1.0
FE2 A:FES231 2.7 10.2 1.0
CB A:CYS119 3.3 11.5 1.0
CB A:CYS107 3.3 10.8 1.0
N A:CYS119 4.2 11.1 1.0
N A:GLY102 4.3 10.6 1.0
N A:CYS107 4.3 11.0 1.0
CA A:CYS119 4.3 11.7 1.0
SG A:CYS99 4.3 11.2 1.0
CB A:ASN117 4.3 12.5 1.0
CA A:CYS107 4.5 10.8 1.0
N A:ASP100 4.5 11.2 1.0
CA A:GLY102 4.5 10.4 1.0
SG A:CYS104 4.6 10.2 1.0
CG A:ASN117 4.6 13.0 1.0
CA A:ASP100 4.7 11.4 1.0
N A:GLY105 4.8 10.9 1.0
N A:HIS101 4.8 10.9 1.0
CD2 A:LEU83 4.8 11.0 1.0
N A:ALA106 4.9 10.5 1.0
C A:ASP100 5.0 11.1 1.0

Iron binding site 4 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 4 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe231

b:10.2
occ:1.00
FE2 A:FES231 0.0 10.2 1.0
S1 A:FES231 2.2 9.7 1.0
S2 A:FES231 2.3 9.8 1.0
SG A:CYS104 2.3 10.2 1.0
SG A:CYS99 2.4 11.2 1.0
FE1 A:FES231 2.7 10.6 1.0
CB A:CYS104 3.5 10.2 1.0
CB A:CYS99 3.5 11.2 1.0
N A:CYS99 3.5 11.1 1.0
N A:CYS104 3.6 11.3 1.0
N A:ASP100 3.9 11.2 1.0
CA A:CYS99 3.9 11.3 1.0
CA A:CYS104 3.9 10.6 1.0
N A:GLY105 3.9 10.9 1.0
N A:GLN103 4.1 10.7 1.0
C A:GLY98 4.2 11.2 1.0
N A:GLY98 4.3 10.7 1.0
C A:CYS104 4.3 10.5 1.0
C A:CYS99 4.3 11.8 1.0
N A:ALA106 4.3 10.5 1.0
CA A:GLY98 4.4 10.7 1.0
N A:GLY102 4.4 10.6 1.0
SG A:CYS119 4.4 11.4 1.0
SG A:CYS107 4.6 12.3 1.0
C A:GLN103 4.6 11.5 1.0
N A:HIS101 4.7 10.9 1.0
C A:GLY102 4.7 11.1 1.0
CA A:GLY102 4.8 10.4 1.0
CA A:GLN103 4.8 11.4 1.0
CA A:ASP100 4.9 11.4 1.0
CA A:GLY105 4.9 10.5 1.0

Iron binding site 5 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 5 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe320

b:16.9
occ:1.00
FE1 B:SF4320 0.0 16.9 1.0
SG B:CYS138 2.1 19.8 1.0
S4 B:SF4320 2.3 20.5 1.0
S2 B:SF4320 2.4 18.9 1.0
S3 B:SF4320 2.4 19.6 1.0
CB B:CYS138 3.0 21.5 1.0
FE4 B:SF4320 3.1 16.9 1.0
FE2 B:SF4320 3.2 17.9 1.0
CA B:CYS138 3.3 21.6 1.0
FE3 B:SF4320 3.3 16.0 1.0
C B:CYS138 3.9 21.6 1.0
S1 B:SF4320 4.0 17.6 1.0
N B:ALA139 4.0 21.1 1.0
N B:ALA140 4.2 20.0 1.0
O B:ALA156 4.3 22.3 1.0
CB B:ALA140 4.3 18.8 1.0
CA B:CYS157 4.3 20.3 1.0
N B:ILE158 4.6 18.5 1.0
SG B:CYS157 4.6 18.5 1.0
N B:CYS138 4.7 23.4 1.0
O B:CYS138 4.7 21.9 1.0
CB B:CYS157 4.8 20.0 1.0
CA B:ALA140 4.8 19.6 1.0
O B:GLY137 4.9 22.8 1.0
SG B:CYS129 4.9 18.8 1.0
CA B:CYS129 5.0 19.3 1.0
N B:ASN130 5.0 20.6 1.0

Iron binding site 6 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 6 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe320

b:17.9
occ:1.00
FE2 B:SF4320 0.0 17.9 1.0
SG B:CYS129 1.8 18.8 1.0
S4 B:SF4320 2.2 20.5 1.0
S3 B:SF4320 2.3 19.6 1.0
S1 B:SF4320 2.5 17.6 1.0
CB B:CYS129 2.9 18.7 1.0
FE1 B:SF4320 3.2 16.9 1.0
FE3 B:SF4320 3.2 16.0 1.0
CA B:CYS129 3.3 19.3 1.0
FE4 B:SF4320 3.4 16.9 1.0
C B:CYS129 3.7 20.3 1.0
N B:ASN130 3.8 20.6 1.0
N B:LYS131 3.9 21.2 1.0
CB B:LYS131 3.9 20.6 1.0
S2 B:SF4320 4.1 18.9 1.0
CB B:PHE122 4.4 16.6 1.0
CA B:PHE122 4.4 16.9 1.0
N B:PHE122 4.5 16.4 1.0
O B:CYS129 4.5 20.0 1.0
CA B:LYS131 4.6 21.8 1.0
N B:CYS129 4.6 20.3 1.0
SG B:CYS119 4.6 15.6 1.0
O B:PRO128 4.7 22.2 1.0
CA B:ASN130 4.9 21.6 1.0
C B:ASN130 4.9 21.9 1.0
N B:ARG132 4.9 24.3 1.0

Iron binding site 7 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 7 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe320

b:16.0
occ:1.00
FE3 B:SF4320 0.0 16.0 1.0
SG B:CYS119 2.0 15.6 1.0
S1 B:SF4320 2.2 17.6 1.0
S4 B:SF4320 2.3 20.5 1.0
S2 B:SF4320 2.4 18.9 1.0
CB B:CYS119 2.9 15.5 1.0
FE2 B:SF4320 3.2 17.9 1.0
FE4 B:SF4320 3.3 16.9 1.0
FE1 B:SF4320 3.3 16.9 1.0
NE2 B:HIS148 3.8 18.7 1.0
S3 B:SF4320 4.1 19.6 1.0
CD2 B:HIS148 4.2 18.8 1.0
CA B:CYS119 4.3 14.9 1.0
CB B:ALA140 4.3 18.8 1.0
N B:PHE122 4.4 16.4 1.0
CB B:PHE122 4.4 16.6 1.0
CB B:ALA159 4.5 16.4 1.0
SG B:CYS129 4.7 18.8 1.0
CB B:TYR121 4.8 17.3 1.0
C B:CYS119 4.9 15.0 1.0
CE1 B:HIS148 4.9 19.3 1.0
CA B:PHE122 4.9 16.9 1.0

Iron binding site 8 out of 8 in 5g5g

Go back to Iron Binding Sites List in 5g5g
Iron binding site 8 out of 8 in the Escherichia Coli Periplasmic Aldehyde Oxidase


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Escherichia Coli Periplasmic Aldehyde Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe320

b:16.9
occ:1.00
FE4 B:SF4320 0.0 16.9 1.0
SG B:CYS157 1.9 18.5 1.0
S2 B:SF4320 2.2 18.9 1.0
S3 B:SF4320 2.3 19.6 1.0
S1 B:SF4320 2.4 17.6 1.0
CB B:CYS157 3.0 20.0 1.0
FE1 B:SF4320 3.1 16.9 1.0
FE3 B:SF4320 3.3 16.0 1.0
FE2 B:SF4320 3.4 17.9 1.0
CB B:ALA159 3.6 16.4 1.0
CA B:CYS157 3.6 20.3 1.0
N B:ALA159 3.9 17.1 1.0
N B:ILE158 4.0 18.5 1.0
S4 B:SF4320 4.0 20.5 1.0
C B:CYS157 4.1 19.7 1.0
CE B:LYS131 4.2 19.7 1.0
CA B:ALA159 4.3 16.6 1.0
CB B:LYS131 4.4 20.6 1.0
SG B:CYS138 4.7 19.8 1.0
O B:ALA156 4.7 22.3 1.0
C B:ILE158 4.8 17.7 1.0
CD B:LYS131 4.9 19.6 1.0
N B:CYS157 4.9 21.9 1.0
SG B:CYS129 4.9 18.8 1.0
CA B:ILE158 5.0 18.4 1.0
O B:HOH2141 5.0 38.6 1.0

Reference:

M.A.Correia, A.R.Otrelo-Cardoso, V.Schwuchow, K.G.Sigfridsson Clauss, M.Haumann, M.J.Romao, S.Leimkuhler, T.Santos-Silva. The Escherichia Coli Periplasmic Aldehyde Oxidoreductase Is An Exceptional Member of the Xanthine Oxidase Family of Molybdoenzymes. Acs Chem.Biol. V. 11 2923 2016.
ISSN: ISSN 1554-8929
PubMed: 27622978
DOI: 10.1021/ACSCHEMBIO.6B00572
Page generated: Tue Aug 6 01:25:13 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy