Iron in PDB 5hgw: Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria

All present enzymatic activity of Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria:
3.5.1.88;

The structure of Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria, PDB code: 5hgw was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 1.60
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	116.690, 121.350, 71.290, 90.00, 90.00, 90.00
R / Rfree (%)	15.4 / 17.8

The binding sites of Iron atom in the Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria (pdb code 5hgw). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria, PDB code: 5hgw:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe200 b:12.0 occ:0.68 NE2 A:HIS145 2.1 13.0 1.0 O A:HOH311 2.2 18.8 1.0 SG A:CYS99 2.2 13.0 1.0 NE2 A:HIS141 2.2 16.0 1.0 CD2 A:HIS141 3.0 16.2 1.0 CE1 A:HIS145 3.1 12.9 1.0 CD2 A:HIS145 3.2 11.1 1.0 CB A:CYS99 3.2 8.9 1.0 CE1 A:HIS141 3.2 15.8 1.0 O A:HOH393 3.5 14.7 1.0 O1 A:SO4201 3.7 16.9 0.9 NE2 A:GLN51 3.8 13.3 1.0 CA A:CYS99 3.8 9.8 1.0 ND1 A:HIS145 4.2 11.6 1.0 CG A:HIS141 4.2 13.0 1.0 CD A:GLN51 4.2 12.1 1.0 O A:HOH441 4.3 10.7 1.0 ND1 A:HIS141 4.3 14.5 1.0 CG A:HIS145 4.3 10.7 1.0 OE1 A:GLN51 4.3 12.1 1.0 N A:LEU100 4.4 10.0 1.0 C A:CYS99 4.5 9.2 1.0 OE2 A:GLU142 4.5 18.2 1.0 O A:GLY98 4.6 12.9 1.0 O2 A:SO4201 4.7 22.0 0.9 OE1 A:GLU142 4.7 20.5 1.0 S A:SO4201 4.7 17.1 0.9 CD A:GLU142 4.9 14.9 1.0 N A:SER101 5.0 11.9 1.0

Iron binding site 2 out of 2 in the Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe200 b:11.4 occ:0.70 NE2 B:HIS145 2.1 10.8 1.0 SG B:CYS99 2.2 14.6 1.0 NE2 B:HIS141 2.2 11.2 1.0 O B:HOH311 2.2 20.2 1.0 CD2 B:HIS141 3.0 13.7 1.0 CE1 B:HIS145 3.1 12.9 1.0 CD2 B:HIS145 3.1 9.5 1.0 CB B:CYS99 3.2 12.9 1.0 CE1 B:HIS141 3.3 13.1 1.0 O B:HOH388 3.5 11.9 1.0 O4 B:SO4201 3.6 38.0 0.8 NE2 B:GLN51 3.7 11.4 1.0 CA B:CYS99 3.8 13.4 1.0 CD B:GLN51 4.1 11.0 1.0 OE1 B:GLN51 4.1 12.2 1.0 CG B:HIS141 4.2 11.0 1.0 ND1 B:HIS145 4.2 10.2 1.0 CG B:HIS145 4.3 9.8 1.0 ND1 B:HIS141 4.3 12.1 1.0 O B:HOH410 4.3 9.5 1.0 OE2 B:GLU142 4.4 14.7 1.0 N B:LEU100 4.5 13.0 1.0 C B:CYS99 4.6 14.4 1.0 O B:GLY98 4.6 16.6 1.0 OE1 B:GLU142 4.7 14.8 1.0 S B:SO4201 4.8 29.8 0.8 O2 B:SO4201 4.8 30.4 0.8 CD B:GLU142 4.8 11.9 1.0

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), J.Abendroth, S.J.Mayclin, D.D.Lorimer, T.E.Edwards. Crystal Structure of A Peptide Deformylase From Burkholderia Ambifaria To Be Published.