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Iron in PDB 5hlq: X-Ray Crystal Structure of Met F43H/H64A Sperm Whale Myoglobin

Protein crystallography data

The structure of X-Ray Crystal Structure of Met F43H/H64A Sperm Whale Myoglobin, PDB code: 5hlq was solved by H.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.95 / 1.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 39.811, 49.197, 77.459, 90.00, 90.00, 90.00
R / Rfree (%) 14.3 / 16

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Crystal Structure of Met F43H/H64A Sperm Whale Myoglobin (pdb code 5hlq). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the X-Ray Crystal Structure of Met F43H/H64A Sperm Whale Myoglobin, PDB code: 5hlq:

Iron binding site 1 out of 1 in 5hlq

Go back to Iron Binding Sites List in 5hlq
Iron binding site 1 out of 1 in the X-Ray Crystal Structure of Met F43H/H64A Sperm Whale Myoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Crystal Structure of Met F43H/H64A Sperm Whale Myoglobin within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:9.1
occ:1.00
FE A:HEM201 0.0 9.1 1.0
ND A:HEM201 2.0 9.6 1.0
NA A:HEM201 2.1 9.0 1.0
NB A:HEM201 2.1 9.2 1.0
NC A:HEM201 2.1 9.6 1.0
NE2 A:HIS93 2.2 9.4 1.0
O A:HOH397 2.2 30.6 1.0
C4D A:HEM201 3.0 8.2 1.0
C4B A:HEM201 3.1 8.3 1.0
C1D A:HEM201 3.1 10.1 1.0
C1B A:HEM201 3.1 8.1 1.0
C1C A:HEM201 3.1 9.4 1.0
C4C A:HEM201 3.1 9.5 1.0
C1A A:HEM201 3.1 8.2 1.0
CE1 A:HIS93 3.1 10.3 1.0
C4A A:HEM201 3.1 8.5 1.0
CD2 A:HIS93 3.2 10.1 1.0
CHA A:HEM201 3.4 8.3 1.0
CHB A:HEM201 3.4 7.4 1.0
CHC A:HEM201 3.5 8.5 1.0
CHD A:HEM201 3.5 9.8 1.0
ND1 A:HIS93 4.3 10.1 1.0
C2B A:HEM201 4.3 8.7 1.0
C2A A:HEM201 4.3 10.0 1.0
C2D A:HEM201 4.3 10.1 1.0
C3D A:HEM201 4.3 9.8 1.0
C3B A:HEM201 4.3 9.0 1.0
C3A A:HEM201 4.3 8.7 1.0
C2C A:HEM201 4.4 9.8 1.0
CG A:HIS93 4.4 9.0 1.0
C3C A:HEM201 4.4 10.4 1.0
O A:HOH472 4.4 26.3 1.0
O A:HOH460 4.6 25.8 1.0
CG2 A:VAL68 4.6 12.1 1.0

Reference:

L.B.Wu, H.Yuan, S.Q.Gao, Y.You, C.M.Nie, G.B.Wen, Y.W.Lin, X.Tan. Regulating the Nitrite Reductase Activity of Myoglobin By Redesigning the Heme Active Center Nitric Oxide V. 57 21 2016.
ISSN: ESSN 1089-8611
PubMed: 27108710
DOI: 10.1016/J.NIOX.2016.04.007
Page generated: Sun Dec 13 16:03:13 2020

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