Iron in PDB 5hy8: Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Protein crystallography data
The structure of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes, PDB code: 5hy8
was solved by
N.T.Saraswathi,
N.S.Pannu,
V.E.Syakhovich,
A.Saurabh,
S.B.Bokut,
D.Moras,
M.Ruff,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
112.13 /
2.30
|
Space group
|
C 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
237.987,
59.267,
137.024,
90.00,
125.36,
90.00
|
R / Rfree (%)
|
20.3 /
24.4
|
Iron Binding Sites:
The binding sites of Iron atom in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
(pdb code 5hy8). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 10 binding sites of Iron where determined in the
Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes, PDB code: 5hy8:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Iron binding site 1 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 1 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe201
b:34.8
occ:1.00
|
FE
|
A:HEM201
|
0.0
|
34.8
|
1.0
|
NE2
|
A:HIS87
|
1.9
|
55.9
|
1.0
|
ND
|
A:HEM201
|
1.9
|
40.1
|
1.0
|
O1
|
A:OXY202
|
2.0
|
46.5
|
1.0
|
NA
|
A:HEM201
|
2.0
|
51.1
|
1.0
|
NB
|
A:HEM201
|
2.1
|
41.6
|
1.0
|
NC
|
A:HEM201
|
2.1
|
37.0
|
1.0
|
CE1
|
A:HIS87
|
2.8
|
56.9
|
1.0
|
C4D
|
A:HEM201
|
2.9
|
39.4
|
1.0
|
C1D
|
A:HEM201
|
2.9
|
42.2
|
1.0
|
CD2
|
A:HIS87
|
3.0
|
52.8
|
1.0
|
C1A
|
A:HEM201
|
3.0
|
47.8
|
1.0
|
C4B
|
A:HEM201
|
3.0
|
35.7
|
1.0
|
C1B
|
A:HEM201
|
3.0
|
44.5
|
1.0
|
C4A
|
A:HEM201
|
3.1
|
46.0
|
1.0
|
C1C
|
A:HEM201
|
3.1
|
30.4
|
1.0
|
O2
|
A:OXY202
|
3.1
|
72.3
|
1.0
|
C4C
|
A:HEM201
|
3.1
|
36.5
|
1.0
|
CHA
|
A:HEM201
|
3.4
|
45.6
|
1.0
|
CHC
|
A:HEM201
|
3.4
|
31.0
|
1.0
|
CHD
|
A:HEM201
|
3.4
|
37.4
|
1.0
|
CHB
|
A:HEM201
|
3.5
|
44.1
|
1.0
|
ND1
|
A:HIS87
|
4.0
|
56.5
|
1.0
|
CG
|
A:HIS87
|
4.1
|
54.2
|
1.0
|
C3D
|
A:HEM201
|
4.2
|
44.7
|
1.0
|
C2D
|
A:HEM201
|
4.2
|
33.7
|
1.0
|
C2A
|
A:HEM201
|
4.2
|
53.8
|
1.0
|
C3A
|
A:HEM201
|
4.3
|
49.0
|
1.0
|
C2B
|
A:HEM201
|
4.3
|
37.7
|
1.0
|
NE2
|
A:HIS58
|
4.3
|
65.5
|
1.0
|
C2C
|
A:HEM201
|
4.3
|
35.6
|
1.0
|
C3B
|
A:HEM201
|
4.3
|
35.7
|
1.0
|
C3C
|
A:HEM201
|
4.3
|
32.1
|
1.0
|
CE1
|
A:HIS58
|
4.4
|
67.9
|
1.0
|
CG2
|
A:VAL62
|
4.8
|
64.0
|
1.0
|
|
Iron binding site 2 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 2 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe201
b:24.5
occ:1.00
|
FE
|
B:HEM201
|
0.0
|
24.5
|
1.0
|
ND
|
B:HEM201
|
1.9
|
25.5
|
1.0
|
NE2
|
B:HIS92
|
2.0
|
35.4
|
1.0
|
O1
|
B:OXY202
|
2.0
|
35.7
|
1.0
|
NA
|
B:HEM201
|
2.0
|
30.6
|
1.0
|
NB
|
B:HEM201
|
2.1
|
27.3
|
1.0
|
NC
|
B:HEM201
|
2.1
|
25.9
|
1.0
|
O2
|
B:OXY202
|
2.3
|
56.0
|
1.0
|
CE1
|
B:HIS92
|
2.9
|
36.2
|
1.0
|
C4D
|
B:HEM201
|
2.9
|
25.4
|
1.0
|
C1D
|
B:HEM201
|
3.0
|
29.3
|
1.0
|
C1A
|
B:HEM201
|
3.0
|
26.9
|
1.0
|
C4B
|
B:HEM201
|
3.0
|
28.4
|
1.0
|
C1C
|
B:HEM201
|
3.1
|
26.1
|
1.0
|
C1B
|
B:HEM201
|
3.1
|
31.5
|
1.0
|
C4A
|
B:HEM201
|
3.1
|
32.5
|
1.0
|
CD2
|
B:HIS92
|
3.1
|
35.5
|
1.0
|
C4C
|
B:HEM201
|
3.1
|
26.0
|
1.0
|
CHA
|
B:HEM201
|
3.3
|
24.7
|
1.0
|
CHC
|
B:HEM201
|
3.4
|
24.1
|
1.0
|
CHB
|
B:HEM201
|
3.5
|
35.2
|
1.0
|
CHD
|
B:HEM201
|
3.5
|
25.7
|
1.0
|
ND1
|
B:HIS92
|
4.0
|
34.8
|
1.0
|
C3D
|
B:HEM201
|
4.2
|
29.1
|
1.0
|
CG
|
B:HIS92
|
4.2
|
34.5
|
1.0
|
C2A
|
B:HEM201
|
4.2
|
33.4
|
1.0
|
C2D
|
B:HEM201
|
4.2
|
26.7
|
1.0
|
C3A
|
B:HEM201
|
4.3
|
35.6
|
1.0
|
C2B
|
B:HEM201
|
4.3
|
28.7
|
1.0
|
C2C
|
B:HEM201
|
4.3
|
26.2
|
1.0
|
NE2
|
B:HIS63
|
4.3
|
47.6
|
1.0
|
C3B
|
B:HEM201
|
4.3
|
30.3
|
1.0
|
C3C
|
B:HEM201
|
4.3
|
24.5
|
1.0
|
CG2
|
B:VAL67
|
4.7
|
43.6
|
1.0
|
CE1
|
B:HIS63
|
5.0
|
52.9
|
1.0
|
|
Iron binding site 3 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 3 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe201
b:36.6
occ:1.00
|
FE
|
C:HEM201
|
0.0
|
36.6
|
1.0
|
ND
|
C:HEM201
|
1.9
|
39.9
|
1.0
|
NE2
|
C:HIS87
|
1.9
|
58.4
|
1.0
|
O1
|
C:OXY202
|
2.0
|
45.3
|
1.0
|
NA
|
C:HEM201
|
2.0
|
45.7
|
1.0
|
NC
|
C:HEM201
|
2.1
|
34.4
|
1.0
|
NB
|
C:HEM201
|
2.1
|
36.2
|
1.0
|
O2
|
C:OXY202
|
2.8
|
71.8
|
1.0
|
CE1
|
C:HIS87
|
2.9
|
58.1
|
1.0
|
C4D
|
C:HEM201
|
2.9
|
41.0
|
1.0
|
C1D
|
C:HEM201
|
2.9
|
36.2
|
1.0
|
CD2
|
C:HIS87
|
3.0
|
54.1
|
1.0
|
C4B
|
C:HEM201
|
3.0
|
37.5
|
1.0
|
C1A
|
C:HEM201
|
3.0
|
46.5
|
1.0
|
C4C
|
C:HEM201
|
3.1
|
33.8
|
1.0
|
C1B
|
C:HEM201
|
3.1
|
38.2
|
1.0
|
C1C
|
C:HEM201
|
3.1
|
34.0
|
1.0
|
C4A
|
C:HEM201
|
3.1
|
41.2
|
1.0
|
CHA
|
C:HEM201
|
3.3
|
48.2
|
1.0
|
CHD
|
C:HEM201
|
3.4
|
32.9
|
1.0
|
CHC
|
C:HEM201
|
3.4
|
34.3
|
1.0
|
CHB
|
C:HEM201
|
3.5
|
39.3
|
1.0
|
ND1
|
C:HIS87
|
4.0
|
56.6
|
1.0
|
CG
|
C:HIS87
|
4.1
|
54.1
|
1.0
|
C2D
|
C:HEM201
|
4.2
|
35.1
|
1.0
|
C3D
|
C:HEM201
|
4.2
|
38.7
|
1.0
|
C2A
|
C:HEM201
|
4.3
|
54.8
|
1.0
|
C3A
|
C:HEM201
|
4.3
|
48.1
|
1.0
|
C2C
|
C:HEM201
|
4.3
|
31.4
|
1.0
|
C3C
|
C:HEM201
|
4.3
|
30.6
|
1.0
|
C2B
|
C:HEM201
|
4.3
|
42.2
|
1.0
|
C3B
|
C:HEM201
|
4.3
|
38.9
|
1.0
|
NE2
|
C:HIS58
|
4.4
|
71.0
|
1.0
|
CE1
|
C:HIS58
|
4.6
|
72.8
|
1.0
|
CG2
|
C:VAL62
|
4.8
|
66.7
|
1.0
|
|
Iron binding site 4 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 4 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe201
b:41.4
occ:1.00
|
FE
|
D:HEM201
|
0.0
|
41.4
|
1.0
|
NE2
|
D:HIS92
|
1.9
|
63.1
|
1.0
|
ND
|
D:HEM201
|
1.9
|
55.9
|
1.0
|
O1
|
D:OXY202
|
2.0
|
44.5
|
1.0
|
NA
|
D:HEM201
|
2.0
|
48.5
|
1.0
|
NC
|
D:HEM201
|
2.1
|
44.4
|
1.0
|
NB
|
D:HEM201
|
2.1
|
46.3
|
1.0
|
CE1
|
D:HIS92
|
2.8
|
66.6
|
1.0
|
C1D
|
D:HEM201
|
2.9
|
49.2
|
1.0
|
C4D
|
D:HEM201
|
2.9
|
53.2
|
1.0
|
CD2
|
D:HIS92
|
3.0
|
61.8
|
1.0
|
C1A
|
D:HEM201
|
3.0
|
52.3
|
1.0
|
C4A
|
D:HEM201
|
3.0
|
49.2
|
1.0
|
O2
|
D:OXY202
|
3.1
|
76.8
|
1.0
|
C4C
|
D:HEM201
|
3.1
|
44.9
|
1.0
|
C1B
|
D:HEM201
|
3.1
|
44.3
|
1.0
|
C4B
|
D:HEM201
|
3.1
|
42.3
|
1.0
|
C1C
|
D:HEM201
|
3.1
|
44.7
|
1.0
|
CHD
|
D:HEM201
|
3.4
|
47.0
|
1.0
|
CHA
|
D:HEM201
|
3.4
|
50.1
|
1.0
|
CHB
|
D:HEM201
|
3.4
|
45.8
|
1.0
|
CHC
|
D:HEM201
|
3.5
|
44.6
|
1.0
|
ND1
|
D:HIS92
|
4.0
|
66.2
|
1.0
|
CG
|
D:HIS92
|
4.1
|
63.6
|
1.0
|
C2D
|
D:HEM201
|
4.2
|
51.6
|
1.0
|
C3D
|
D:HEM201
|
4.2
|
54.0
|
1.0
|
C2A
|
D:HEM201
|
4.2
|
54.5
|
1.0
|
C3A
|
D:HEM201
|
4.2
|
49.7
|
1.0
|
C2B
|
D:HEM201
|
4.3
|
45.7
|
1.0
|
NE2
|
D:HIS63
|
4.3
|
68.9
|
1.0
|
C3C
|
D:HEM201
|
4.3
|
42.4
|
1.0
|
C2C
|
D:HEM201
|
4.3
|
41.1
|
1.0
|
C3B
|
D:HEM201
|
4.4
|
41.3
|
1.0
|
CG2
|
D:VAL67
|
4.8
|
68.2
|
1.0
|
CE1
|
D:HIS63
|
5.0
|
73.7
|
1.0
|
|
Iron binding site 5 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 5 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:69.0
occ:1.00
|
FE
|
E:HEM201
|
0.0
|
69.0
|
1.0
|
ND
|
E:HEM201
|
1.9
|
54.3
|
1.0
|
NA
|
E:HEM201
|
2.0
|
74.1
|
1.0
|
NB
|
E:HEM201
|
2.1
|
56.2
|
1.0
|
NE2
|
E:HIS87
|
2.1
|
0.2
|
1.0
|
CE1
|
E:HIS87
|
2.1
|
0.8
|
1.0
|
NC
|
E:HEM201
|
2.1
|
63.2
|
1.0
|
C4D
|
E:HEM201
|
2.9
|
58.4
|
1.0
|
C1D
|
E:HEM201
|
3.0
|
52.6
|
1.0
|
C1A
|
E:HEM201
|
3.0
|
65.0
|
1.0
|
C4B
|
E:HEM201
|
3.0
|
63.6
|
1.0
|
C4A
|
E:HEM201
|
3.0
|
78.0
|
1.0
|
C1B
|
E:HEM201
|
3.0
|
59.2
|
1.0
|
C1C
|
E:HEM201
|
3.1
|
54.0
|
1.0
|
C4C
|
E:HEM201
|
3.1
|
63.9
|
1.0
|
CHA
|
E:HEM201
|
3.4
|
54.2
|
1.0
|
CHB
|
E:HEM201
|
3.4
|
69.4
|
1.0
|
ND1
|
E:HIS87
|
3.4
|
0.4
|
1.0
|
CHC
|
E:HEM201
|
3.4
|
55.6
|
1.0
|
CHD
|
E:HEM201
|
3.4
|
66.6
|
1.0
|
CD2
|
E:HIS87
|
3.5
|
0.7
|
1.0
|
CG
|
E:HIS87
|
4.1
|
0.1
|
1.0
|
C3A
|
E:HEM201
|
4.2
|
79.0
|
1.0
|
C2D
|
E:HEM201
|
4.2
|
55.3
|
1.0
|
C2A
|
E:HEM201
|
4.2
|
79.7
|
1.0
|
C3D
|
E:HEM201
|
4.2
|
60.9
|
1.0
|
C2B
|
E:HEM201
|
4.3
|
62.3
|
1.0
|
C2C
|
E:HEM201
|
4.3
|
63.1
|
1.0
|
C3B
|
E:HEM201
|
4.3
|
60.5
|
1.0
|
C3C
|
E:HEM201
|
4.4
|
55.9
|
1.0
|
NE2
|
E:HIS58
|
4.4
|
0.1
|
1.0
|
CE1
|
E:HIS58
|
4.6
|
0.5
|
1.0
|
CG2
|
E:VAL62
|
4.7
|
0.2
|
1.0
|
|
Iron binding site 6 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 6 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe201
b:34.0
occ:1.00
|
FE
|
F:HEM201
|
0.0
|
34.0
|
1.0
|
O1
|
F:OXY202
|
1.9
|
78.8
|
1.0
|
ND
|
F:HEM201
|
1.9
|
36.9
|
1.0
|
NA
|
F:HEM201
|
2.0
|
34.0
|
1.0
|
NE2
|
F:HIS92
|
2.0
|
39.6
|
1.0
|
NC
|
F:HEM201
|
2.0
|
31.2
|
1.0
|
NB
|
F:HEM201
|
2.1
|
33.6
|
1.0
|
O2
|
F:OXY202
|
2.7
|
81.6
|
1.0
|
C1D
|
F:HEM201
|
2.9
|
36.0
|
1.0
|
C4D
|
F:HEM201
|
2.9
|
35.2
|
1.0
|
CE1
|
F:HIS92
|
3.0
|
38.3
|
1.0
|
C1A
|
F:HEM201
|
3.0
|
35.6
|
1.0
|
C4C
|
F:HEM201
|
3.0
|
34.5
|
1.0
|
C4A
|
F:HEM201
|
3.0
|
35.5
|
1.0
|
CD2
|
F:HIS92
|
3.0
|
33.9
|
1.0
|
C4B
|
F:HEM201
|
3.0
|
30.1
|
1.0
|
C1C
|
F:HEM201
|
3.0
|
31.6
|
1.0
|
C1B
|
F:HEM201
|
3.1
|
33.3
|
1.0
|
CHD
|
F:HEM201
|
3.4
|
40.4
|
1.0
|
CHA
|
F:HEM201
|
3.4
|
32.6
|
1.0
|
CHC
|
F:HEM201
|
3.4
|
29.8
|
1.0
|
CHB
|
F:HEM201
|
3.4
|
34.1
|
1.0
|
ND1
|
F:HIS92
|
4.1
|
35.3
|
1.0
|
CG
|
F:HIS92
|
4.2
|
33.7
|
1.0
|
C2D
|
F:HEM201
|
4.2
|
36.8
|
1.0
|
C3A
|
F:HEM201
|
4.2
|
35.8
|
1.0
|
C2A
|
F:HEM201
|
4.2
|
41.5
|
1.0
|
C3D
|
F:HEM201
|
4.2
|
41.5
|
1.0
|
C2C
|
F:HEM201
|
4.2
|
31.3
|
1.0
|
C3C
|
F:HEM201
|
4.2
|
34.1
|
1.0
|
C2B
|
F:HEM201
|
4.3
|
29.7
|
1.0
|
NE2
|
F:HIS63
|
4.3
|
92.4
|
1.0
|
C3B
|
F:HEM201
|
4.3
|
32.1
|
1.0
|
CG2
|
F:VAL67
|
4.6
|
72.6
|
1.0
|
CE1
|
F:HIS63
|
4.9
|
96.7
|
1.0
|
|
Iron binding site 7 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 7 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe201
b:48.3
occ:1.00
|
FE
|
G:HEM201
|
0.0
|
48.3
|
1.0
|
ND
|
G:HEM201
|
1.9
|
37.1
|
1.0
|
NE2
|
G:HIS87
|
1.9
|
99.0
|
1.0
|
NA
|
G:HEM201
|
2.0
|
54.5
|
1.0
|
NB
|
G:HEM201
|
2.0
|
42.6
|
1.0
|
NC
|
G:HEM201
|
2.1
|
43.4
|
1.0
|
O2
|
G:OXY202
|
2.4
|
80.9
|
1.0
|
C1D
|
G:HEM201
|
2.9
|
44.9
|
1.0
|
CE1
|
G:HIS87
|
2.9
|
0.7
|
1.0
|
C4D
|
G:HEM201
|
2.9
|
47.8
|
1.0
|
CD2
|
G:HIS87
|
3.0
|
95.8
|
1.0
|
O1
|
G:OXY202
|
3.0
|
0.7
|
1.0
|
C4B
|
G:HEM201
|
3.0
|
48.0
|
1.0
|
C1A
|
G:HEM201
|
3.0
|
51.1
|
1.0
|
C1B
|
G:HEM201
|
3.0
|
55.6
|
1.0
|
C4A
|
G:HEM201
|
3.1
|
50.8
|
1.0
|
C4C
|
G:HEM201
|
3.1
|
35.9
|
1.0
|
C1C
|
G:HEM201
|
3.2
|
42.0
|
1.0
|
CHD
|
G:HEM201
|
3.4
|
40.7
|
1.0
|
CHA
|
G:HEM201
|
3.4
|
46.8
|
1.0
|
CHB
|
G:HEM201
|
3.5
|
50.2
|
1.0
|
CHC
|
G:HEM201
|
3.5
|
42.7
|
1.0
|
ND1
|
G:HIS87
|
4.0
|
0.7
|
1.0
|
CG
|
G:HIS87
|
4.1
|
0.4
|
1.0
|
C2D
|
G:HEM201
|
4.2
|
37.8
|
1.0
|
C3D
|
G:HEM201
|
4.2
|
43.8
|
1.0
|
C2A
|
G:HEM201
|
4.2
|
64.5
|
1.0
|
C3A
|
G:HEM201
|
4.2
|
61.7
|
1.0
|
C2B
|
G:HEM201
|
4.3
|
51.9
|
1.0
|
C3B
|
G:HEM201
|
4.3
|
47.2
|
1.0
|
C3C
|
G:HEM201
|
4.3
|
40.1
|
1.0
|
C2C
|
G:HEM201
|
4.4
|
43.9
|
1.0
|
NE2
|
G:HIS58
|
4.4
|
82.9
|
1.0
|
CE1
|
G:HIS58
|
4.7
|
88.1
|
1.0
|
CG2
|
G:VAL62
|
4.9
|
78.7
|
1.0
|
|
Iron binding site 8 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 8 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe201
b:75.3
occ:1.00
|
FE
|
H:HEM201
|
0.0
|
75.3
|
1.0
|
ND
|
H:HEM201
|
1.9
|
73.7
|
1.0
|
NE2
|
H:HIS92
|
2.0
|
0.1
|
1.0
|
NA
|
H:HEM201
|
2.0
|
70.6
|
1.0
|
NC
|
H:HEM201
|
2.1
|
61.9
|
1.0
|
NB
|
H:HEM201
|
2.1
|
75.3
|
1.0
|
CE1
|
H:HIS92
|
2.8
|
1.0
|
1.0
|
C4D
|
H:HEM201
|
2.9
|
70.1
|
1.0
|
C1D
|
H:HEM201
|
2.9
|
72.6
|
1.0
|
C1A
|
H:HEM201
|
3.0
|
77.2
|
1.0
|
C1C
|
H:HEM201
|
3.0
|
55.7
|
1.0
|
C4B
|
H:HEM201
|
3.0
|
61.6
|
1.0
|
C4A
|
H:HEM201
|
3.1
|
77.6
|
1.0
|
C1B
|
H:HEM201
|
3.1
|
78.3
|
1.0
|
C4C
|
H:HEM201
|
3.1
|
52.7
|
1.0
|
CD2
|
H:HIS92
|
3.1
|
0.6
|
1.0
|
CHA
|
H:HEM201
|
3.3
|
70.0
|
1.0
|
CHC
|
H:HEM201
|
3.4
|
54.5
|
1.0
|
CHD
|
H:HEM201
|
3.4
|
59.8
|
1.0
|
CHB
|
H:HEM201
|
3.5
|
81.4
|
1.0
|
ND1
|
H:HIS92
|
4.0
|
0.6
|
1.0
|
CG
|
H:HIS92
|
4.2
|
0.1
|
1.0
|
C3D
|
H:HEM201
|
4.2
|
86.8
|
1.0
|
C2D
|
H:HEM201
|
4.2
|
78.1
|
1.0
|
C2A
|
H:HEM201
|
4.2
|
83.1
|
1.0
|
C2C
|
H:HEM201
|
4.2
|
60.6
|
1.0
|
C3A
|
H:HEM201
|
4.2
|
77.0
|
1.0
|
NE2
|
H:HIS63
|
4.2
|
0.0
|
1.0
|
C3C
|
H:HEM201
|
4.3
|
53.1
|
1.0
|
C2B
|
H:HEM201
|
4.3
|
68.1
|
1.0
|
C3B
|
H:HEM201
|
4.3
|
63.1
|
1.0
|
CG2
|
H:VAL67
|
4.5
|
0.1
|
1.0
|
CE1
|
H:HIS63
|
4.9
|
0.1
|
1.0
|
|
Iron binding site 9 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 9 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
S:Fe201
b:50.7
occ:1.00
|
FE
|
S:HEM201
|
0.0
|
50.7
|
1.0
|
ND
|
S:HEM201
|
1.9
|
45.7
|
1.0
|
NE2
|
S:HIS87
|
1.9
|
93.8
|
1.0
|
NA
|
S:HEM201
|
2.0
|
50.8
|
1.0
|
O1
|
S:OXY202
|
2.0
|
63.8
|
1.0
|
NB
|
S:HEM201
|
2.1
|
44.3
|
1.0
|
NC
|
S:HEM201
|
2.1
|
44.1
|
1.0
|
CE1
|
S:HIS87
|
2.8
|
95.0
|
1.0
|
C4D
|
S:HEM201
|
2.9
|
42.9
|
1.0
|
C1D
|
S:HEM201
|
2.9
|
51.0
|
1.0
|
C4B
|
S:HEM201
|
3.0
|
41.5
|
1.0
|
C1A
|
S:HEM201
|
3.0
|
45.6
|
1.0
|
C4A
|
S:HEM201
|
3.0
|
52.6
|
1.0
|
C1C
|
S:HEM201
|
3.0
|
40.5
|
1.0
|
CD2
|
S:HIS87
|
3.0
|
89.2
|
1.0
|
C1B
|
S:HEM201
|
3.1
|
48.3
|
1.0
|
C4C
|
S:HEM201
|
3.1
|
45.1
|
1.0
|
O2
|
S:OXY202
|
3.1
|
88.6
|
1.0
|
CHA
|
S:HEM201
|
3.3
|
41.4
|
1.0
|
CHC
|
S:HEM201
|
3.4
|
40.5
|
1.0
|
CHD
|
S:HEM201
|
3.4
|
45.4
|
1.0
|
CHB
|
S:HEM201
|
3.5
|
53.0
|
1.0
|
ND1
|
S:HIS87
|
4.0
|
94.6
|
1.0
|
CG
|
S:HIS87
|
4.1
|
89.9
|
1.0
|
C3D
|
S:HEM201
|
4.1
|
46.2
|
1.0
|
C2D
|
S:HEM201
|
4.2
|
41.7
|
1.0
|
C2A
|
S:HEM201
|
4.2
|
54.5
|
1.0
|
C3A
|
S:HEM201
|
4.2
|
54.2
|
1.0
|
C2C
|
S:HEM201
|
4.2
|
44.1
|
1.0
|
C3B
|
S:HEM201
|
4.2
|
41.0
|
1.0
|
C2B
|
S:HEM201
|
4.3
|
38.9
|
1.0
|
C3C
|
S:HEM201
|
4.3
|
37.9
|
1.0
|
NE2
|
S:HIS58
|
4.5
|
0.1
|
1.0
|
CE1
|
S:HIS58
|
4.5
|
0.6
|
1.0
|
CG2
|
S:VAL62
|
4.8
|
99.9
|
1.0
|
|
Iron binding site 10 out
of 10 in 5hy8
Go back to
Iron Binding Sites List in 5hy8
Iron binding site 10 out
of 10 in the Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes
Mono view
Stereo pair view
|
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
T:Fe201
b:71.2
occ:1.00
|
FE
|
T:HEM201
|
0.0
|
71.2
|
1.0
|
NE2
|
T:HIS92
|
1.9
|
0.8
|
1.0
|
ND
|
T:HEM201
|
1.9
|
0.4
|
1.0
|
O1
|
T:OXY202
|
2.0
|
56.6
|
1.0
|
NA
|
T:HEM201
|
2.0
|
0.6
|
1.0
|
NB
|
T:HEM201
|
2.1
|
97.7
|
1.0
|
NC
|
T:HEM201
|
2.1
|
96.3
|
1.0
|
CE1
|
T:HIS92
|
2.8
|
0.7
|
1.0
|
C4D
|
T:HEM201
|
2.9
|
0.2
|
1.0
|
C1D
|
T:HEM201
|
3.0
|
99.3
|
1.0
|
CD2
|
T:HIS92
|
3.0
|
0.1
|
1.0
|
C1A
|
T:HEM201
|
3.0
|
0.9
|
1.0
|
C4A
|
T:HEM201
|
3.1
|
0.9
|
1.0
|
O2
|
T:OXY202
|
3.1
|
84.8
|
1.0
|
C1B
|
T:HEM201
|
3.1
|
98.7
|
1.0
|
C4B
|
T:HEM201
|
3.1
|
90.0
|
1.0
|
C4C
|
T:HEM201
|
3.1
|
91.0
|
1.0
|
C1C
|
T:HEM201
|
3.1
|
82.7
|
1.0
|
CHA
|
T:HEM201
|
3.4
|
0.1
|
1.0
|
CHD
|
T:HEM201
|
3.4
|
96.1
|
1.0
|
CHB
|
T:HEM201
|
3.5
|
0.4
|
1.0
|
CHC
|
T:HEM201
|
3.5
|
83.3
|
1.0
|
ND1
|
T:HIS92
|
4.0
|
0.9
|
1.0
|
CG
|
T:HIS92
|
4.1
|
0.8
|
1.0
|
C3D
|
T:HEM201
|
4.2
|
1.0
|
1.0
|
C2D
|
T:HEM201
|
4.2
|
0.7
|
1.0
|
C2A
|
T:HEM201
|
4.2
|
0.3
|
1.0
|
NE2
|
T:HIS63
|
4.2
|
0.8
|
1.0
|
C3A
|
T:HEM201
|
4.2
|
0.8
|
1.0
|
C2B
|
T:HEM201
|
4.3
|
91.9
|
1.0
|
C2C
|
T:HEM201
|
4.3
|
89.6
|
1.0
|
C3C
|
T:HEM201
|
4.3
|
85.3
|
1.0
|
C3B
|
T:HEM201
|
4.4
|
92.5
|
1.0
|
CG1
|
T:VAL67
|
4.5
|
0.2
|
1.0
|
CE1
|
T:HIS63
|
4.9
|
0.5
|
1.0
|
|
Reference:
N.T.Saraswathi,
N.S.Pannu,
V.E.Syakhovich,
A.Saurabh,
S.B.Bokut,
D.Moras,
M.Ruff.
Glycation Restrains Allosteric Transition in Hemoglobin: the Molecular Basis of Oxidative Stress Under Hyperglycemic Conditions in Diabetes To Be Published.
Page generated: Tue Aug 6 02:00:29 2024
|