Iron in PDB 5i0v: Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions

Protein crystallography data

The structure of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions, PDB code: 5i0v was solved by A.C.Chan, M.E.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.00 / 1.65
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 54.220, 73.720, 74.850, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21.2

Other elements in 5i0v:

The structure of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions also contains other interesting chemical elements:

Copper (Cu) 3 atoms
Chlorine (Cl) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions (pdb code 5i0v). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions, PDB code: 5i0v:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5i0v

Go back to Iron Binding Sites List in 5i0v
Iron binding site 1 out of 2 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:24.4
occ:0.65
O A:HOH302 1.9 37.1 1.0
O A:HOH306 2.1 32.3 1.0
OE1 A:GLU3 2.1 39.1 1.0
O A:HOH325 2.2 23.3 1.0
OE1 A:GLU44 2.2 20.8 1.0
O A:HOH312 2.2 29.9 1.0
CD A:GLU3 3.0 38.3 1.0
CD A:GLU44 3.1 20.2 1.0
O A:HOH308 3.4 30.9 1.0
OE2 A:GLU3 3.4 37.0 1.0
OE2 A:GLU44 3.4 22.1 1.0
OD1 A:ASP92 4.0 30.1 1.0
OD2 A:ASP92 4.1 31.6 1.0
OD1 A:ASP46 4.1 17.3 0.5
OD2 A:ASP46 4.2 17.8 0.5
CG A:GLU3 4.3 38.3 1.0
CG A:ASP92 4.5 29.4 1.0
CG2 A:VAL20 4.5 20.0 1.0
ND1 A:HIS95 4.5 16.9 1.0
CG A:GLU44 4.5 18.8 1.0
CG A:ASP46 4.6 17.4 0.5
CG A:HIS95 4.8 15.9 1.0
CB A:GLU44 4.8 17.5 1.0
CE1 A:HIS95 4.9 17.4 1.0

Iron binding site 2 out of 2 in 5i0v

Go back to Iron Binding Sites List in 5i0v
Iron binding site 2 out of 2 in the Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Iron and Copper-Bound P19 From Campylobacter Jejuni Under Oxidizing Conditions within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:19.3
occ:0.85
OE1 B:GLU44 2.0 18.3 1.0
OE2 B:GLU3 2.0 23.4 1.0
O B:HOH306 2.1 22.9 1.0
O B:HOH349 2.1 21.7 1.0
OD2 B:ASP92 2.2 22.7 1.0
O B:HOH311 2.3 23.3 1.0
CD B:GLU3 3.1 24.4 1.0
CD B:GLU44 3.1 16.2 1.0
CG B:ASP92 3.2 21.1 1.0
OD1 B:ASP92 3.4 20.8 1.0
OE2 B:GLU44 3.5 17.7 1.0
OE1 B:GLU3 3.5 23.8 1.0
O B:HOH411 4.0 33.8 1.0
OD1 B:ASP46 4.2 20.2 1.0
OD2 B:ASP46 4.3 19.1 1.0
CG B:GLU3 4.4 23.4 1.0
O B:HOH391 4.4 28.2 1.0
CG B:GLU44 4.4 14.9 1.0
CG2 B:VAL20 4.4 15.4 1.0
CB B:ASP92 4.6 19.9 1.0
CB B:GLU44 4.7 13.4 1.0
CG B:ASP46 4.7 18.4 1.0
ND1 B:HIS95 4.9 13.1 1.0
CD2 B:LEU22 5.0 21.0 1.0

Reference:

A.C.Chan, D.Koch, G.Grass, M.E.Murphy, D.H.Nies. Metal-Handling and Receptor Recognition By Fetp and P19 From Uropathogenic Escherichia Coli and Campylobacter Jejuni To Be Published.
Page generated: Sun Dec 13 16:03:28 2020

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