Iron in PDB 5jdo: T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin

The structure of T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin, PDB code: 5jdo was solved by H.Lane-Serff, M.K.Higgins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	102.41 / 3.20
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	72.750, 127.300, 172.420, 90.00, 90.00, 90.00
R / Rfree (%)	20.4 / 23.5

The binding sites of Iron atom in the T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin (pdb code 5jdo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin, PDB code: 5jdo:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in the T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ C:Fe201 b:53.1 occ:1.00 FE C:HEM201 0.0 53.1 1.0 ND C:HEM201 1.9 56.0 1.0 NA C:HEM201 2.0 54.3 1.0 NC C:HEM201 2.1 53.1 1.0 NB C:HEM201 2.1 55.1 1.0 NE2 C:HIS88 2.2 66.4 1.0 C1A C:HEM201 2.9 54.2 1.0 C4D C:HEM201 2.9 56.8 1.0 C1D C:HEM201 2.9 56.7 1.0 C4C C:HEM201 3.0 55.2 1.0 C4A C:HEM201 3.0 53.7 1.0 C1C C:HEM201 3.1 52.6 1.0 CE1 C:HIS88 3.1 66.0 1.0 C4B C:HEM201 3.1 54.9 1.0 C1B C:HEM201 3.2 54.0 1.0 CD2 C:HIS88 3.3 66.6 1.0 CHA C:HEM201 3.3 57.2 1.0 CHD C:HEM201 3.4 56.3 1.0 CHC C:HEM201 3.5 54.4 1.0 O1 C:OXY202 3.5 0.7 1.0 CHB C:HEM201 3.5 53.0 1.0 O2 C:OXY202 3.8 0.2 1.0 C2A C:HEM201 4.1 51.8 1.0 C3D C:HEM201 4.2 55.0 1.0 C3A C:HEM201 4.2 51.6 1.0 C3C C:HEM201 4.2 53.1 1.0 C2D C:HEM201 4.2 56.2 1.0 C2C C:HEM201 4.2 50.4 1.0 ND1 C:HIS88 4.3 66.8 1.0 CG C:HIS88 4.4 65.2 1.0 C2B C:HEM201 4.4 53.4 1.0 NE2 C:HIS59 4.4 63.2 1.0 C3B C:HEM201 4.4 54.4 1.0 CE1 C:HIS59 4.8 62.6 1.0 CD1 C:LEU92 4.9 65.2 1.0

Iron binding site 2 out of 4 in the T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ D:Fe201 b:65.8 occ:1.00 FE D:HEM201 0.0 65.8 1.0 ND D:HEM201 1.9 67.6 1.0 NA D:HEM201 2.0 63.9 1.0 NB D:HEM201 2.1 67.2 1.0 NC D:HEM201 2.1 66.5 1.0 NE2 D:HIS93 2.2 70.8 1.0 C4D D:HEM201 2.9 67.0 1.0 C1A D:HEM201 2.9 64.8 1.0 C1D D:HEM201 2.9 66.2 1.0 C4A D:HEM201 3.0 64.0 1.0 C4C D:HEM201 3.0 66.0 1.0 O2 D:OXY202 3.1 0.8 1.0 C1C D:HEM201 3.1 66.5 1.0 C4B D:HEM201 3.1 67.5 1.0 C1B D:HEM201 3.1 66.3 1.0 O1 D:OXY202 3.2 0.4 1.0 CE1 D:HIS93 3.2 70.7 1.0 CD2 D:HIS93 3.2 71.4 1.0 CHA D:HEM201 3.3 65.5 1.0 CHD D:HEM201 3.4 65.5 1.0 CHB D:HEM201 3.4 64.4 1.0 CHC D:HEM201 3.5 66.7 1.0 C2A D:HEM201 4.1 66.5 1.0 C3D D:HEM201 4.2 66.2 1.0 C3A D:HEM201 4.2 65.0 1.0 C2D D:HEM201 4.2 64.3 1.0 C3C D:HEM201 4.3 63.6 1.0 C2C D:HEM201 4.3 65.0 1.0 ND1 D:HIS93 4.3 71.8 1.0 C2B D:HEM201 4.3 65.7 1.0 CG D:HIS93 4.3 69.9 1.0 C3B D:HEM201 4.3 67.6 1.0 CG1 D:VAL68 4.5 77.6 1.0 NE2 D:HIS64 4.6 74.1 1.0 CE1 D:HIS64 5.0 73.8 1.0

Iron binding site 3 out of 4 in the T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe201 b:55.8 occ:1.00 FE E:HEM201 0.0 55.8 1.0 ND E:HEM201 1.9 53.6 1.0 NA E:HEM201 2.0 56.5 1.0 NB E:HEM201 2.1 53.5 1.0 NC E:HEM201 2.1 55.5 1.0 NE2 E:HIS88 2.4 59.7 1.0 O1 E:OXY202 2.4 0.9 1.0 C1A E:HEM201 2.9 55.7 1.0 C4D E:HEM201 2.9 50.4 1.0 C1D E:HEM201 2.9 51.5 1.0 C4A E:HEM201 3.0 57.0 1.0 C4C E:HEM201 3.0 54.4 1.0 CE1 E:HIS88 3.1 59.7 1.0 C1C E:HEM201 3.1 56.5 1.0 C4B E:HEM201 3.1 54.6 1.0 C1B E:HEM201 3.1 51.9 1.0 O2 E:OXY202 3.2 1.0 1.0 CHA E:HEM201 3.3 51.6 1.0 CHD E:HEM201 3.4 53.4 1.0 CHB E:HEM201 3.4 54.1 1.0 CHC E:HEM201 3.4 56.7 1.0 CD2 E:HIS88 3.6 59.6 1.0 C2A E:HEM201 4.1 58.9 1.0 C3A E:HEM201 4.1 59.5 1.0 C3D E:HEM201 4.2 48.8 1.0 C2D E:HEM201 4.2 45.6 1.0 NE2 E:HIS59 4.2 73.1 1.0 C3C E:HEM201 4.2 53.6 1.0 C2C E:HEM201 4.3 55.8 1.0 ND1 E:HIS88 4.3 60.1 1.0 C2B E:HEM201 4.3 50.4 1.0 C3B E:HEM201 4.4 51.5 1.0 CE1 E:HIS59 4.5 73.4 1.0 CG E:HIS88 4.5 58.2 1.0 CG2 E:VAL63 5.0 65.9 1.0

Iron binding site 4 out of 4 in the T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of T. Congolense Haptoglobin-Haemoglobin Receptor in Complex with Haemoglobin within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe201 b:62.6 occ:1.00 FE F:HEM201 0.0 62.6 1.0 ND F:HEM201 1.9 63.6 1.0 NA F:HEM201 2.0 63.6 1.0 NE2 F:HIS93 2.1 67.8 1.0 NB F:HEM201 2.1 63.4 1.0 NC F:HEM201 2.1 63.2 1.0 O1 F:OXY202 2.5 97.0 1.0 C4D F:HEM201 2.9 64.9 1.0 C1D F:HEM201 2.9 63.8 1.0 C1A F:HEM201 2.9 64.3 1.0 CD2 F:HIS93 2.9 68.3 1.0 C4A F:HEM201 3.0 63.1 1.0 C4C F:HEM201 3.0 63.3 1.0 C1B F:HEM201 3.1 60.4 1.0 C1C F:HEM201 3.1 62.1 1.0 C4B F:HEM201 3.1 65.9 1.0 O2 F:OXY202 3.2 96.4 1.0 CE1 F:HIS93 3.2 67.5 1.0 CHA F:HEM201 3.3 64.1 1.0 CHD F:HEM201 3.3 64.0 1.0 CHB F:HEM201 3.4 61.6 1.0 CHC F:HEM201 3.5 63.4 1.0 C3D F:HEM201 4.1 66.9 1.0 CG F:HIS93 4.1 67.3 1.0 C2A F:HEM201 4.1 64.2 1.0 C2D F:HEM201 4.1 64.2 1.0 C3A F:HEM201 4.2 61.3 1.0 C3C F:HEM201 4.2 59.7 1.0 C2C F:HEM201 4.3 59.3 1.0 ND1 F:HIS93 4.3 68.6 1.0 C2B F:HEM201 4.3 62.7 1.0 C3B F:HEM201 4.4 66.7 1.0 NE2 F:HIS64 4.5 79.7 1.0 CE1 F:HIS64 4.9 79.7 1.0 CG2 F:VAL68 5.0 73.9 1.0

H.Lane-Serff, P.Macgregor, L.Peacock, O.J.Macleod, C.Kay, W.Gibson, M.K.Higgins, M.Carrington. Evolutionary Diversification of the Trypanosome Haptoglobin-Haemoglobin Receptor From An Ancestral Haemoglobin Receptor. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27083048
DOI: 10.7554/ELIFE.13044