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Iron in PDB 5jj5: Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III)

Protein crystallography data

The structure of Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III), PDB code: 5jj5 was solved by P.J.Stogios, Z.Wawrzak, M.Kurdritska, V.Yim, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.24 / 2.30
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 77.809, 73.844, 87.161, 90.00, 115.79, 90.00
R / Rfree (%) 14.6 / 19.6

Other elements in 5jj5:

The structure of Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III) also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III) (pdb code 5jj5). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III), PDB code: 5jj5:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5jj5

Go back to Iron Binding Sites List in 5jj5
Iron binding site 1 out of 2 in the Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:35.7
occ:1.00
OAI A:6L0402 2.1 25.2 1.0
OAH A:6L0402 2.1 20.4 1.0
OAF A:6L0402 2.1 20.0 1.0
OAG A:6L0402 2.1 21.1 1.0
OAD A:6L0402 2.1 22.6 1.0
OAE A:6L0402 2.2 23.9 1.0
CBM A:6L0402 2.6 24.0 1.0
NBO A:6L0402 2.8 26.6 1.0
CBL A:6L0402 2.8 32.3 1.0
NBN A:6L0402 2.8 19.4 1.0
CBK A:6L0402 3.0 22.8 1.0
NBP A:6L0402 3.1 24.3 1.0
O A:HOH505 3.2 27.1 1.0
CBA A:6L0402 4.0 18.8 1.0
OH A:TYR225 4.0 20.6 1.0
CBC A:6L0402 4.1 27.7 1.0
CAJ A:6L0402 4.1 19.6 1.0
CBB A:6L0402 4.2 17.0 1.0
NH2 A:ARG231 4.2 16.5 1.0
CAZ A:6L0402 4.3 34.7 1.0
CBD A:6L0402 4.3 17.2 1.0
NH1 A:ARG231 4.4 16.9 1.0
OD2 B:ASP89 4.4 62.2 1.0
CAY A:6L0402 4.5 25.0 1.0
CAP A:6L0402 4.6 21.2 1.0
CAR A:6L0402 4.6 30.1 1.0
CAL A:6L0402 4.7 29.3 1.0
CAQ A:6L0402 4.7 21.0 1.0
CZ A:ARG231 4.8 17.5 1.0
CE1 A:TYR225 4.8 24.8 1.0
CAX A:6L0402 4.8 23.2 1.0
CAW A:6L0402 4.8 24.0 1.0
CZ A:TYR225 4.9 22.3 1.0
CE1 A:PHE255 4.9 25.9 1.0
CE A:MET213 4.9 60.2 1.0
CAV A:6L0402 5.0 29.3 1.0

Iron binding site 2 out of 2 in 5jj5

Go back to Iron Binding Sites List in 5jj5
Iron binding site 2 out of 2 in the Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of Iron Uptake Abc Transporter Substrate-Binding Protein Piaa From Streptococcus Pneumoniae Canada MDR_19A Bound to Hydroxymate Siderophore Ferrioxamine E and Iron(III) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe401

b:41.0
occ:1.00
OAI B:6L0402 2.1 30.4 1.0
OAD B:6L0402 2.1 34.2 1.0
OAE B:6L0402 2.2 28.3 1.0
OAF B:6L0402 2.2 38.2 1.0
OAG B:6L0402 2.2 20.4 1.0
OAH B:6L0402 2.2 24.3 1.0
CBM B:6L0402 2.7 30.9 1.0
CBL B:6L0402 2.9 32.6 1.0
NBP B:6L0402 2.9 25.9 1.0
NBN B:6L0402 3.0 27.8 1.0
NBO B:6L0402 3.0 24.3 1.0
CBK B:6L0402 3.0 37.6 1.0
O B:HOH511 3.4 58.3 1.0
OH B:TYR225 4.0 26.5 1.0
CBA B:6L0402 4.1 30.6 1.0
CBC B:6L0402 4.2 23.3 1.0
CBB B:6L0402 4.2 31.9 1.0
NH1 B:ARG231 4.2 19.5 1.0
NH2 B:ARG231 4.2 19.9 1.0
CBD B:6L0402 4.3 23.4 1.0
CAZ B:6L0402 4.4 34.5 1.0
CAY B:6L0402 4.4 45.5 1.0
CAJ B:6L0402 4.5 30.1 1.0
CAQ B:6L0402 4.6 17.9 1.0
CAV B:6L0402 4.6 54.4 1.0
CAR B:6L0402 4.6 22.4 1.0
CAP B:6L0402 4.7 37.3 1.0
CAL B:6L0402 4.7 22.5 1.0
CZ B:ARG231 4.7 24.3 1.0
CE1 B:TYR225 4.8 22.8 1.0
CE B:MET213 4.9 28.4 0.5
CE1 B:PHE255 4.9 21.6 1.0
CZ B:TYR225 4.9 28.1 1.0
CAW B:6L0402 4.9 39.4 1.0
O B:HOH625 5.0 47.4 1.0

Reference:

P.J.Stogios, P.J.Stogios, Z.Wawrzak, M.Kurdritska, V.Yim, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid). N/A N/A.
Page generated: Sun Dec 13 16:04:14 2020

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