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Iron in PDB 5juy: Active Human Apoptosome with Procaspase-9

Enzymatic activity of Active Human Apoptosome with Procaspase-9

All present enzymatic activity of Active Human Apoptosome with Procaspase-9:
3.4.22.62;

Iron Binding Sites:

The binding sites of Iron atom in the Active Human Apoptosome with Procaspase-9 (pdb code 5juy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 7 binding sites of Iron where determined in the Active Human Apoptosome with Procaspase-9, PDB code: 5juy:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7;

Iron binding site 1 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 1 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Fe500

b:50.0
occ:1.00
FE H:HEC500 0.0 50.0 1.0
ND H:HEC500 2.0 50.0 1.0
NC H:HEC500 2.0 50.0 1.0
NA H:HEC500 2.1 50.0 1.0
NB H:HEC500 2.1 50.0 1.0
NE2 H:HIS18 2.6 50.0 1.0
CE1 H:HIS18 2.9 50.0 1.0
SD H:MET80 3.0 50.0 1.0
C1B H:HEC500 3.0 50.0 1.0
C1D H:HEC500 3.0 50.0 1.0
C4C H:HEC500 3.0 50.0 1.0
C4B H:HEC500 3.0 50.0 1.0
C4A H:HEC500 3.1 50.0 1.0
C4D H:HEC500 3.1 50.0 1.0
C1A H:HEC500 3.1 50.0 1.0
C1C H:HEC500 3.1 50.0 1.0
CE H:MET80 3.4 50.0 1.0
CHD H:HEC500 3.4 50.0 1.0
CHB H:HEC500 3.4 50.0 1.0
CHA H:HEC500 3.4 50.0 1.0
CHC H:HEC500 3.4 50.0 1.0
CG H:MET80 3.5 50.0 1.0
CD2 H:HIS18 3.9 50.0 1.0
ND1 H:HIS18 4.2 50.0 1.0
C2B H:HEC500 4.2 50.0 1.0
C3B H:HEC500 4.2 50.0 1.0
C3A H:HEC500 4.3 50.0 1.0
C2A H:HEC500 4.3 50.0 1.0
C2D H:HEC500 4.3 50.0 1.0
C3C H:HEC500 4.3 50.0 1.0
C2C H:HEC500 4.3 50.0 1.0
C3D H:HEC500 4.3 50.0 1.0
CB H:MET80 4.3 50.0 1.0
CG H:HIS18 4.7 50.0 1.0

Iron binding site 2 out of 7 in 5juy

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Iron binding site 2 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
I:Fe500

b:50.0
occ:1.00
FE I:HEC500 0.0 50.0 1.0
ND I:HEC500 2.0 50.0 1.0
NC I:HEC500 2.0 50.0 1.0
NA I:HEC500 2.1 50.0 1.0
NB I:HEC500 2.1 50.0 1.0
NE2 I:HIS18 2.6 50.0 1.0
CE1 I:HIS18 2.9 50.0 1.0
SD I:MET80 3.0 50.0 1.0
C1B I:HEC500 3.0 50.0 1.0
C1D I:HEC500 3.0 50.0 1.0
C4C I:HEC500 3.0 50.0 1.0
C4B I:HEC500 3.0 50.0 1.0
C4A I:HEC500 3.1 50.0 1.0
C4D I:HEC500 3.1 50.0 1.0
C1A I:HEC500 3.1 50.0 1.0
C1C I:HEC500 3.1 50.0 1.0
CE I:MET80 3.4 50.0 1.0
CHD I:HEC500 3.4 50.0 1.0
CHB I:HEC500 3.4 50.0 1.0
CHA I:HEC500 3.4 50.0 1.0
CHC I:HEC500 3.4 50.0 1.0
CG I:MET80 3.5 50.0 1.0
CD2 I:HIS18 3.9 50.0 1.0
ND1 I:HIS18 4.2 50.0 1.0
C2B I:HEC500 4.2 50.0 1.0
C3B I:HEC500 4.2 50.0 1.0
C3A I:HEC500 4.3 50.0 1.0
C2A I:HEC500 4.3 50.0 1.0
C2D I:HEC500 4.3 50.0 1.0
C3C I:HEC500 4.3 50.0 1.0
C2C I:HEC500 4.3 50.0 1.0
C3D I:HEC500 4.3 50.0 1.0
CB I:MET80 4.3 50.0 1.0
CG I:HIS18 4.7 50.0 1.0

Iron binding site 3 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 3 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Fe500

b:50.0
occ:1.00
FE J:HEC500 0.0 50.0 1.0
ND J:HEC500 2.0 50.0 1.0
NC J:HEC500 2.0 50.0 1.0
NA J:HEC500 2.1 50.0 1.0
NB J:HEC500 2.1 50.0 1.0
NE2 J:HIS18 2.6 50.0 1.0
CE1 J:HIS18 2.9 50.0 1.0
SD J:MET80 3.0 50.0 1.0
C1B J:HEC500 3.0 50.0 1.0
C1D J:HEC500 3.0 50.0 1.0
C4C J:HEC500 3.0 50.0 1.0
C4B J:HEC500 3.0 50.0 1.0
C4A J:HEC500 3.1 50.0 1.0
C4D J:HEC500 3.1 50.0 1.0
C1A J:HEC500 3.1 50.0 1.0
C1C J:HEC500 3.1 50.0 1.0
CE J:MET80 3.4 50.0 1.0
CHD J:HEC500 3.4 50.0 1.0
CHB J:HEC500 3.4 50.0 1.0
CHA J:HEC500 3.4 50.0 1.0
CHC J:HEC500 3.4 50.0 1.0
CG J:MET80 3.5 50.0 1.0
CD2 J:HIS18 3.9 50.0 1.0
ND1 J:HIS18 4.2 50.0 1.0
C2B J:HEC500 4.2 50.0 1.0
C3B J:HEC500 4.2 50.0 1.0
C3A J:HEC500 4.3 50.0 1.0
C2A J:HEC500 4.3 50.0 1.0
C2D J:HEC500 4.3 50.0 1.0
C3C J:HEC500 4.3 50.0 1.0
C2C J:HEC500 4.3 50.0 1.0
C3D J:HEC500 4.3 50.0 1.0
CB J:MET80 4.3 50.0 1.0
CG J:HIS18 4.7 50.0 1.0

Iron binding site 4 out of 7 in 5juy

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Iron binding site 4 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Fe500

b:50.0
occ:1.00
FE K:HEC500 0.0 50.0 1.0
ND K:HEC500 2.0 50.0 1.0
NC K:HEC500 2.0 50.0 1.0
NA K:HEC500 2.1 50.0 1.0
NB K:HEC500 2.1 50.0 1.0
NE2 K:HIS18 2.6 50.0 1.0
CE1 K:HIS18 2.9 50.0 1.0
SD K:MET80 3.0 50.0 1.0
C1B K:HEC500 3.0 50.0 1.0
C1D K:HEC500 3.0 50.0 1.0
C4C K:HEC500 3.0 50.0 1.0
C4B K:HEC500 3.0 50.0 1.0
C4A K:HEC500 3.1 50.0 1.0
C4D K:HEC500 3.1 50.0 1.0
C1A K:HEC500 3.1 50.0 1.0
C1C K:HEC500 3.1 50.0 1.0
CE K:MET80 3.4 50.0 1.0
CHD K:HEC500 3.4 50.0 1.0
CHB K:HEC500 3.4 50.0 1.0
CHA K:HEC500 3.4 50.0 1.0
CHC K:HEC500 3.4 50.0 1.0
CG K:MET80 3.5 50.0 1.0
CD2 K:HIS18 3.9 50.0 1.0
ND1 K:HIS18 4.2 50.0 1.0
C2B K:HEC500 4.2 50.0 1.0
C3B K:HEC500 4.2 50.0 1.0
C3A K:HEC500 4.3 50.0 1.0
C2A K:HEC500 4.3 50.0 1.0
C2D K:HEC500 4.3 50.0 1.0
C3C K:HEC500 4.3 50.0 1.0
C2C K:HEC500 4.3 50.0 1.0
C3D K:HEC500 4.3 50.0 1.0
CB K:MET80 4.3 50.0 1.0
CG K:HIS18 4.7 50.0 1.0

Iron binding site 5 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 5 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Fe500

b:50.0
occ:1.00
FE L:HEC500 0.0 50.0 1.0
ND L:HEC500 2.0 50.0 1.0
NC L:HEC500 2.0 50.0 1.0
NA L:HEC500 2.1 50.0 1.0
NB L:HEC500 2.1 50.0 1.0
NE2 L:HIS18 2.6 50.0 1.0
CE1 L:HIS18 2.9 50.0 1.0
SD L:MET80 3.0 50.0 1.0
C1B L:HEC500 3.0 50.0 1.0
C1D L:HEC500 3.0 50.0 1.0
C4C L:HEC500 3.0 50.0 1.0
C4B L:HEC500 3.0 50.0 1.0
C4A L:HEC500 3.1 50.0 1.0
C4D L:HEC500 3.1 50.0 1.0
C1A L:HEC500 3.1 50.0 1.0
C1C L:HEC500 3.1 50.0 1.0
CE L:MET80 3.4 50.0 1.0
CHD L:HEC500 3.4 50.0 1.0
CHB L:HEC500 3.4 50.0 1.0
CHA L:HEC500 3.4 50.0 1.0
CHC L:HEC500 3.4 50.0 1.0
CG L:MET80 3.5 50.0 1.0
CD2 L:HIS18 3.9 50.0 1.0
ND1 L:HIS18 4.2 50.0 1.0
C2B L:HEC500 4.2 50.0 1.0
C3B L:HEC500 4.2 50.0 1.0
C3A L:HEC500 4.3 50.0 1.0
C2A L:HEC500 4.3 50.0 1.0
C2D L:HEC500 4.3 50.0 1.0
C3C L:HEC500 4.3 50.0 1.0
C2C L:HEC500 4.3 50.0 1.0
C3D L:HEC500 4.3 50.0 1.0
CB L:MET80 4.3 50.0 1.0
CG L:HIS18 4.7 50.0 1.0

Iron binding site 6 out of 7 in 5juy

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Iron binding site 6 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Fe500

b:50.0
occ:1.00
FE M:HEC500 0.0 50.0 1.0
ND M:HEC500 2.0 50.0 1.0
NC M:HEC500 2.0 50.0 1.0
NA M:HEC500 2.1 50.0 1.0
NB M:HEC500 2.1 50.0 1.0
NE2 M:HIS18 2.6 50.0 1.0
CE1 M:HIS18 2.9 50.0 1.0
SD M:MET80 3.0 50.0 1.0
C1B M:HEC500 3.0 50.0 1.0
C1D M:HEC500 3.0 50.0 1.0
C4C M:HEC500 3.0 50.0 1.0
C4B M:HEC500 3.0 50.0 1.0
C4A M:HEC500 3.1 50.0 1.0
C4D M:HEC500 3.1 50.0 1.0
C1A M:HEC500 3.1 50.0 1.0
C1C M:HEC500 3.1 50.0 1.0
CE M:MET80 3.4 50.0 1.0
CHD M:HEC500 3.4 50.0 1.0
CHB M:HEC500 3.4 50.0 1.0
CHA M:HEC500 3.4 50.0 1.0
CHC M:HEC500 3.4 50.0 1.0
CG M:MET80 3.5 50.0 1.0
CD2 M:HIS18 3.9 50.0 1.0
ND1 M:HIS18 4.2 50.0 1.0
C2B M:HEC500 4.2 50.0 1.0
C3B M:HEC500 4.2 50.0 1.0
C3A M:HEC500 4.3 50.0 1.0
C2A M:HEC500 4.3 50.0 1.0
C2D M:HEC500 4.3 50.0 1.0
C3C M:HEC500 4.3 50.0 1.0
C2C M:HEC500 4.3 50.0 1.0
C3D M:HEC500 4.3 50.0 1.0
CB M:MET80 4.3 50.0 1.0
CG M:HIS18 4.7 50.0 1.0

Iron binding site 7 out of 7 in 5juy

Go back to Iron Binding Sites List in 5juy
Iron binding site 7 out of 7 in the Active Human Apoptosome with Procaspase-9


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Active Human Apoptosome with Procaspase-9 within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Fe500

b:50.0
occ:1.00
FE N:HEC500 0.0 50.0 1.0
ND N:HEC500 2.0 50.0 1.0
NC N:HEC500 2.0 50.0 1.0
NA N:HEC500 2.1 50.0 1.0
NB N:HEC500 2.1 50.0 1.0
NE2 N:HIS18 2.6 50.0 1.0
CE1 N:HIS18 2.9 50.0 1.0
SD N:MET80 3.0 50.0 1.0
C1B N:HEC500 3.0 50.0 1.0
C1D N:HEC500 3.0 50.0 1.0
C4C N:HEC500 3.0 50.0 1.0
C4B N:HEC500 3.0 50.0 1.0
C4A N:HEC500 3.1 50.0 1.0
C4D N:HEC500 3.1 50.0 1.0
C1A N:HEC500 3.1 50.0 1.0
C1C N:HEC500 3.1 50.0 1.0
CE N:MET80 3.4 50.0 1.0
CHD N:HEC500 3.4 50.0 1.0
CHB N:HEC500 3.4 50.0 1.0
CHA N:HEC500 3.4 50.0 1.0
CHC N:HEC500 3.4 50.0 1.0
CG N:MET80 3.5 50.0 1.0
CD2 N:HIS18 3.9 50.0 1.0
ND1 N:HIS18 4.2 50.0 1.0
C2B N:HEC500 4.2 50.0 1.0
C3B N:HEC500 4.2 50.0 1.0
C3A N:HEC500 4.3 50.0 1.0
C2A N:HEC500 4.3 50.0 1.0
C2D N:HEC500 4.3 50.0 1.0
C3C N:HEC500 4.3 50.0 1.0
C3D N:HEC500 4.3 50.0 1.0
C2C N:HEC500 4.3 50.0 1.0
CB N:MET80 4.3 50.0 1.0
CG N:HIS18 4.7 50.0 1.0

Reference:

T.C.Cheng, C.Hong, I.V.Akey, S.Yuan, C.W.Akey. A Near Atomic Structure of the Active Human Apoptosome. Elife V. 5 2016.
ISSN: ESSN 2050-084X
PubMed: 27697150
DOI: 10.7554/ELIFE.17755
Page generated: Sun Dec 13 16:05:02 2020

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