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Iron in PDB 5kdy: The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate

Protein crystallography data

The structure of The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate, PDB code: 5kdy was solved by T.Coleman, J.B.Bruning, S.G.Bell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.08 / 1.59
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 44.704, 51.388, 78.274, 90.00, 93.13, 90.00
R / Rfree (%) 18.5 / 24.8

Other elements in 5kdy:

The structure of The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate (pdb code 5kdy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate, PDB code: 5kdy:

Iron binding site 1 out of 1 in 5kdy

Go back to Iron Binding Sites List in 5kdy
Iron binding site 1 out of 1 in the The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe501

b:5.4
occ:1.00
FE A:HEM501 0.0 5.4 1.0
NB A:HEM501 2.0 7.2 1.0
NC A:HEM501 2.0 4.9 1.0
ND A:HEM501 2.1 2.4 1.0
NA A:HEM501 2.1 5.8 1.0
SG A:CYS358 2.4 4.9 1.0
C4B A:HEM501 3.0 4.0 1.0
C1C A:HEM501 3.0 5.6 1.0
C1B A:HEM501 3.1 3.7 1.0
C4C A:HEM501 3.1 6.8 1.0
C1D A:HEM501 3.1 6.0 1.0
C4D A:HEM501 3.1 2.8 1.0
C4A A:HEM501 3.1 5.2 1.0
C1A A:HEM501 3.1 4.6 1.0
CB A:CYS358 3.3 3.2 1.0
CHC A:HEM501 3.4 4.8 1.0
CHB A:HEM501 3.5 5.8 1.0
CHD A:HEM501 3.5 6.2 1.0
CHA A:HEM501 3.5 4.9 1.0
C8 A:ANN502 4.0 7.9 1.0
CA A:CYS358 4.0 8.3 1.0
C2C A:HEM501 4.2 8.6 1.0
C3B A:HEM501 4.2 6.5 1.0
C2B A:HEM501 4.3 6.9 1.0
C3C A:HEM501 4.3 5.9 1.0
C2D A:HEM501 4.3 5.6 1.0
C3A A:HEM501 4.3 5.7 1.0
C3D A:HEM501 4.3 4.9 1.0
C2A A:HEM501 4.4 5.0 1.0
CB A:ALA248 4.7 6.4 1.0
C A:CYS358 4.8 4.8 1.0
N A:GLY360 4.9 3.6 1.0
N A:VAL359 4.9 5.7 1.0
O A:ALA248 4.9 9.5 1.0

Reference:

T.Coleman, J.B.Bruning, S.G.Bell. The Crystal Structure of the D251N Mutant of CYP199A4 in Complex with 4-Methoxybenzoate To Be Published.
Page generated: Sun Dec 13 16:05:23 2020

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