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Iron in PDB 5ksi: Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate
Protein crystallography data
The structure of Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate, PDB code: 5ksi
was solved by
M.H.Ahmed,
M.K.Safo,
Y.Xia,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 30.00 / 1.80 |
| Space group | P 21 21 2 |
| Cell size a, b, c (Å), α, β, γ (°) | 95.940, 98.080, 65.140, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 18 / 22 |
Iron Binding Sites:
The binding sites of Iron atom in the Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate
(pdb code 5ksi). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate, PDB code: 5ksi:
Jump to Iron binding site number: 1; 2; 3; 4;
In total 4 binding sites of Iron where determined in the Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate, PDB code: 5ksi:
Jump to Iron binding site number: 1; 2; 3; 4;
Iron binding site 1 out of 4 in 5ksi
Go back to
Iron Binding Sites List in 5ksi
Iron binding site 1 out
of 4 in the Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate within 5.0Å range:
|
Iron binding site 2 out of 4 in 5ksi
Go back to
Iron Binding Sites List in 5ksi
Iron binding site 2 out
of 4 in the Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate within 5.0Å range:
|
Iron binding site 3 out of 4 in 5ksi
Go back to
Iron Binding Sites List in 5ksi
Iron binding site 3 out
of 4 in the Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate within 5.0Å range:
|
Iron binding site 4 out of 4 in 5ksi
Go back to
Iron Binding Sites List in 5ksi
Iron binding site 4 out
of 4 in the Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of Deoxygenated Hemoglobin in Complex with Sphingosine Phosphate and 2,3-Bisphosphoglycerate within 5.0Å range:
|
Reference:
K.Sun,
A.D'alessandro,
M.H.Ahmed,
Y.Zhang,
A.Song,
T.P.Ko,
T.Nemkov,
J.A.Reisz,
H.Wu,
M.Adebiyi,
Z.Peng,
J.Gong,
H.Liu,
A.Huang,
Y.E.Wen,
A.Q.Wen,
V.Berka,
M.V.Bogdanov,
O.Abdulmalik,
L.Han,
A.L.Tsai,
M.Idowu,
H.S.Juneja,
R.E.Kellems,
W.Dowhan,
K.C.Hansen,
M.K.Safo,
Y.Xia.
Structural and Functional Insight of Sphingosine 1-Phosphate-Mediated Pathogenic Metabolic Reprogramming in Sickle Cell Disease. Sci Rep V. 7 15281 2017.
ISSN: ESSN 2045-2322
PubMed: 29127281
DOI: 10.1038/S41598-017-13667-8
Page generated: Sun Dec 13 16:06:08 2020
ISSN: ESSN 2045-2322
PubMed: 29127281
DOI: 10.1038/S41598-017-13667-8
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