Atomistry » Iron » PDB 5kts-5lg8 » 5l1s
Atomistry »
  Iron »
    PDB 5kts-5lg8 »
      5l1s »

Iron in PDB 5l1s: X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F

Enzymatic activity of X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F

All present enzymatic activity of X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F:
1.14.19.8;

Protein crystallography data

The structure of X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F, PDB code: 5l1s was solved by L.Duan, G.Jogl, D.E.Cane, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.60 / 2.08
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 44.595, 164.145, 82.535, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 19.3

Iron Binding Sites:

The binding sites of Iron atom in the X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F (pdb code 5l1s). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F, PDB code: 5l1s:

Iron binding site 1 out of 1 in 5l1s

Go back to Iron Binding Sites List in 5l1s
Iron binding site 1 out of 1 in the X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of X-Ray Structure of F232L Mutant of Cytochrome P450 Pntm with Pentalenolactone F within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe402

b:14.3
occ:1.00
FE A:HEM402 0.0 14.3 1.0
ND A:HEM402 2.1 12.2 1.0
NB A:HEM402 2.1 10.4 1.0
NC A:HEM402 2.1 12.4 1.0
NA A:HEM402 2.1 7.4 1.0
SG A:CYS347 2.4 12.8 1.0
C4B A:HEM402 3.0 10.5 1.0
C1D A:HEM402 3.1 12.7 1.0
C1C A:HEM402 3.1 10.1 1.0
C4D A:HEM402 3.1 10.9 1.0
C4C A:HEM402 3.1 11.0 1.0
C1A A:HEM402 3.1 8.8 1.0
C1B A:HEM402 3.1 12.0 1.0
C4A A:HEM402 3.1 10.8 1.0
O A:HOH595 3.4 16.9 1.0
CHC A:HEM402 3.4 10.4 1.0
CHD A:HEM402 3.4 8.8 1.0
CHA A:HEM402 3.5 12.2 1.0
CHB A:HEM402 3.5 10.9 1.0
CB A:CYS347 3.5 9.5 1.0
CA A:CYS347 4.0 11.2 1.0
C2D A:HEM402 4.3 12.4 1.0
C3D A:HEM402 4.3 15.8 1.0
C3B A:HEM402 4.3 15.4 1.0
C2C A:HEM402 4.3 9.3 1.0
C3C A:HEM402 4.3 12.7 1.0
C2B A:HEM402 4.3 13.0 1.0
C3A A:HEM402 4.3 14.6 1.0
C2A A:HEM402 4.3 13.8 1.0
C1 A:7PF401 4.5 10.3 1.0
N A:ILE348 4.7 10.7 1.0
C A:CYS347 4.7 9.4 1.0
N A:GLY349 4.7 11.0 1.0

Reference:

L.Duan, G.Jogl, D.E.Cane. The Cytochrome P450-Catalyzed Oxidative Rearrangement in the Final Step of Pentalenolactone Biosynthesis: Substrate Structure Determines Mechanism. J.Am.Chem.Soc. V. 138 12678 2016.
ISSN: ESSN 1520-5126
PubMed: 27588339
DOI: 10.1021/JACS.6B08610
Page generated: Tue Aug 6 04:02:56 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy