Iron in PDB 5l7l: Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg)

The structure of Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg), PDB code: 5l7l was solved by S.Glatt, C.W.Mueller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.61 / 2.59
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	73.760, 161.410, 93.220, 90.00, 90.00, 90.00
R / Rfree (%)	18.2 / 21.9

The structure of Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg) also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

The binding sites of Iron atom in the Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg) (pdb code 5l7l). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg), PDB code: 5l7l:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in the Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:72.5 occ:0.51 FE1 A:FES502 0.0 72.5 0.5 S1 A:FES502 2.2 78.5 0.5 S2 A:FES502 2.2 65.6 0.5 FE2 A:FES502 2.7 72.5 0.5 N A:ARG173 4.3 86.7 1.0 SG A:CYS30 4.5 0.6 1.0 SG A:CYS27 4.6 95.2 1.0 CA A:ARG173 4.7 87.6 1.0

Iron binding site 2 out of 2 in the Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Crystal Structure of ELP3 From Dehalococcoides Mccartyi (390-407 Gsgsg) within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe502 b:72.5 occ:0.51 FE2 A:FES502 0.0 72.5 0.5 S1 A:FES502 2.2 78.5 0.5 S2 A:FES502 2.2 65.6 0.5 SG A:CYS30 2.3 0.6 1.0 SG A:CYS27 2.3 95.2 1.0 FE1 A:FES502 2.7 72.5 0.5 CB A:CYS27 3.2 79.1 1.0 CB A:CYS30 3.4 73.1 1.0 N A:CYS30 3.4 83.2 1.0 CA A:CYS30 3.6 80.8 1.0 C A:TYR29 4.2 88.0 1.0 CB A:TYR29 4.5 83.1 1.0 CA A:CYS27 4.6 81.7 1.0 CA A:TYR29 4.8 92.5 1.0 NH1 A:ARG173 4.8 0.9 1.0 O A:TYR29 4.9 94.3 1.0 N A:TYR29 4.9 90.1 1.0 O A:CYS27 5.0 88.6 1.0 C A:CYS27 5.0 79.5 1.0

S.Glatt, R.Zabel, O.Kolaj-Robin, O.F.Onuma, F.Baudin, A.Graziadei, V.Taverniti, T.Y.Lin, F.Baymann, B.Seraphin, K.D.Breunig, C.W.Muller. Structural Basis For Trna Modification By ELP3 From Dehalococcoides Mccartyi. Nat.Struct.Mol.Biol. V. 23 794 2016.
ISSN: ESSN 1545-9985
PubMed: 27455459
DOI: 10.1038/NSMB.3265