Iron in PDB 5ll6: Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation

The structure of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

The binding sites of Iron atom in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation (pdb code 5ll6). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 8 binding sites of Iron where determined in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation, PDB code: 5ll6:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Iron binding site 1 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe701 b:2.0 occ:1.00 FE1 h:SF4701 0.0 2.0 1.0 S2 h:SF4701 2.1 2.0 1.0 S4 h:SF4701 2.1 2.0 1.0 S3 h:SF4701 2.2 2.0 1.0 SG h:CYS29 2.5 35.9 1.0 FE3 h:SF4701 3.0 2.0 1.0 FE2 h:SF4701 3.1 2.0 1.0 FE4 h:SF4701 3.1 2.0 1.0 S1 h:SF4701 3.6 2.0 1.0 CB h:CYS29 3.8 34.0 1.0 CD1 h:ILE39 4.1 37.5 1.0 CD h:PRO30 4.2 33.5 1.0 SG h:CYS58 4.3 31.1 1.0 SG h:CYS38 4.5 81.2 1.0 CA h:CYS29 4.5 34.6 1.0 CB h:VAL31 4.6 32.5 1.0 CG1 h:ILE39 4.6 36.9 1.0 SG h:CYS61 4.6 25.7 1.0 N h:VAL31 4.7 30.8 1.0 N h:PRO30 4.7 34.2 1.0 CG h:PRO30 4.7 33.9 1.0 CG2 h:VAL31 4.7 32.5 1.0 C h:CYS29 4.9 36.9 1.0 CB h:CYS38 4.9 83.3 1.0 SG h:CYS55 4.9 50.5 1.0

Iron binding site 2 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe701 b:2.0 occ:1.00 FE2 h:SF4701 0.0 2.0 1.0 SG h:CYS55 2.0 50.5 1.0 S4 h:SF4701 2.1 2.0 1.0 S3 h:SF4701 2.1 2.0 1.0 S1 h:SF4701 2.1 2.0 1.0 CB h:CYS55 2.8 57.9 1.0 FE1 h:SF4701 3.1 2.0 1.0 FE4 h:SF4701 3.2 2.0 1.0 FE3 h:SF4701 3.3 2.0 1.0 CA h:CYS55 3.5 62.3 1.0 S2 h:SF4701 3.8 2.0 1.0 SG h:CYS38 4.0 81.2 1.0 CB h:ALA9 4.0 26.8 1.0 C h:CYS55 4.3 57.6 1.0 O h:GLY57 4.6 29.6 1.0 N h:ALA9 4.6 26.2 1.0 N h:ILE56 4.6 51.1 1.0 N h:CYS55 4.7 74.4 1.0 SG h:CYS58 4.8 31.1 1.0 CG2 h:ILE50 4.8 46.7 1.0 N h:GLY57 4.9 37.4 1.0 SG h:CYS61 4.9 25.7 1.0 CA h:ALA9 5.0 27.9 1.0

Iron binding site 3 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe701 b:2.0 occ:1.00 FE3 h:SF4701 0.0 2.0 1.0 SG h:CYS61 1.8 25.7 1.0 S2 h:SF4701 2.1 2.0 1.0 S4 h:SF4701 2.1 2.0 1.0 S1 h:SF4701 2.2 2.0 1.0 FE1 h:SF4701 3.0 2.0 1.0 FE4 h:SF4701 3.2 2.0 1.0 CB h:CYS61 3.2 26.6 1.0 FE2 h:SF4701 3.3 2.0 1.0 S3 h:SF4701 3.7 2.0 1.0 N h:CYS61 4.0 24.8 1.0 SG h:CYS58 4.2 31.1 1.0 CA h:CYS61 4.2 26.7 1.0 CD1 h:ILE39 4.2 37.5 1.0 CB h:ALA9 4.6 26.8 1.0 N h:ILE60 4.6 25.2 1.0 O h:GLY57 4.8 29.6 1.0 SG h:CYS29 4.8 35.9 1.0 SG h:CYS55 4.9 50.5 1.0 CG2 h:ILE60 4.9 28.9 1.0 N h:GLY59 4.9 25.9 1.0 N h:VAL62 5.0 31.1 1.0 CA h:GLY59 5.0 27.1 1.0

Iron binding site 4 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe701 b:2.0 occ:1.00 FE4 h:SF4701 0.0 2.0 1.0 SG h:CYS58 1.7 31.1 1.0 S1 h:SF4701 2.1 2.0 1.0 S3 h:SF4701 2.1 2.0 1.0 S2 h:SF4701 2.2 2.0 1.0 O h:GLY57 2.7 29.6 1.0 FE1 h:SF4701 3.1 2.0 1.0 FE2 h:SF4701 3.2 2.0 1.0 FE3 h:SF4701 3.2 2.0 1.0 C h:GLY57 3.3 32.4 1.0 CB h:CYS58 3.4 29.2 1.0 S4 h:SF4701 3.7 2.0 1.0 N h:GLY59 3.7 25.9 1.0 N h:GLY57 3.8 37.4 1.0 SG h:CYS55 3.9 50.5 1.0 N h:CYS58 3.9 31.2 1.0 CA h:CYS58 4.1 29.0 1.0 CA h:GLY57 4.1 36.0 1.0 CG2 h:ILE56 4.2 51.9 1.0 C h:CYS58 4.4 26.6 1.0 CA h:GLY59 4.7 27.1 1.0 SG h:CYS61 4.7 25.7 1.0 N h:ILE60 4.7 25.2 1.0 N h:ILE56 4.8 51.1 1.0 CG2 h:ILE60 4.9 28.9 1.0 C h:ILE56 5.0 43.0 1.0

Iron binding site 5 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe702 b:2.0 occ:1.00 FE1 h:SF4702 0.0 2.0 1.0 S2 h:SF4702 2.1 2.0 1.0 S4 h:SF4702 2.2 2.0 1.0 S3 h:SF4702 2.2 2.0 1.0 SG h:CYS25 2.6 38.7 1.0 CB h:CYS25 3.0 41.9 1.0 FE3 h:SF4702 3.1 2.0 1.0 FE4 h:SF4702 3.2 2.0 1.0 FE2 h:SF4702 3.3 2.0 1.0 S1 h:SF4702 3.8 2.0 1.0 CB h:ALA48 3.9 83.1 1.0 CA h:CYS25 4.2 44.0 1.0 N h:CYS25 4.2 39.1 1.0 SG h:CYS65 4.6 47.8 1.0 CG1 h:VAL41 4.9 96.2 1.0 SG h:CYS21 4.9 48.9 1.0 CA h:GLN23 5.0 46.1 1.0

Iron binding site 6 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe702 b:2.0 occ:1.00 FE2 h:SF4702 0.0 2.0 1.0 SG h:CYS21 1.7 48.9 1.0 S1 h:SF4702 2.1 2.0 1.0 S3 h:SF4702 2.1 2.0 1.0 S4 h:SF4702 2.2 2.0 1.0 CB h:CYS21 3.0 54.4 1.0 FE4 h:SF4702 3.2 2.0 1.0 FE3 h:SF4702 3.2 2.0 1.0 FE1 h:SF4702 3.3 2.0 1.0 CA h:GLN23 3.6 46.1 1.0 O h:LYS17 3.7 77.6 1.0 S2 h:SF4702 3.8 2.0 1.0 CA h:PRO18 3.9 57.9 1.0 N h:GLN23 3.9 44.1 1.0 CB h:GLN23 4.3 48.4 1.0 CA h:CYS21 4.3 59.5 1.0 O h:PRO18 4.4 65.1 1.0 N h:GLU24 4.5 43.6 1.0 C h:LYS17 4.5 75.0 1.0 C h:GLN23 4.6 46.9 1.0 C h:PRO18 4.6 58.5 1.0 N h:PRO18 4.6 60.0 1.0 C h:CYS21 4.7 55.8 1.0 CB h:PRO18 4.7 56.1 1.0 SG h:CYS65 4.8 47.8 1.0 N h:CYS21 4.9 64.6 1.0 CG h:PRO66 4.9 57.8 1.0 CD h:PRO66 4.9 56.1 1.0 O h:CYS21 5.0 56.1 1.0

Iron binding site 7 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe702 b:2.0 occ:1.00 FE3 h:SF4702 0.0 2.0 1.0 SG h:CYS65 2.0 47.8 1.0 S4 h:SF4702 2.1 2.0 1.0 S2 h:SF4702 2.2 2.0 1.0 S1 h:SF4702 2.2 2.0 1.0 FE1 h:SF4702 3.1 2.0 1.0 FE4 h:SF4702 3.1 2.0 1.0 FE2 h:SF4702 3.2 2.0 1.0 S3 h:SF4702 3.6 2.0 1.0 CB h:CYS65 3.6 51.8 1.0 SG h:CYS25 3.7 38.7 1.0 CD h:PRO66 4.2 56.1 1.0 CA h:CYS65 4.4 53.9 1.0 O h:PHE67 4.5 65.3 1.0 CB h:ALA69 4.6 54.4 1.0 SG h:CYS21 4.6 48.9 1.0 N h:PRO66 4.7 53.7 1.0 CG h:PRO66 4.7 57.8 1.0 C h:CYS65 4.8 54.2 1.0 N h:PHE67 4.9 55.9 1.0

Iron binding site 8 out of 8 in the Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Structure of the 40S ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation within 5.0Å range: probe atom residue distance (Å) B Occ h:Fe702 b:2.0 occ:1.00 FE4 h:SF4702 0.0 2.0 1.0 S3 h:SF4702 2.1 2.0 1.0 S1 h:SF4702 2.1 2.0 1.0 S2 h:SF4702 2.2 2.0 1.0 SG h:CYS16 3.0 0.5 1.0 FE3 h:SF4702 3.1 2.0 1.0 FE2 h:SF4702 3.2 2.0 1.0 FE1 h:SF4702 3.2 2.0 1.0 S4 h:SF4702 3.7 2.0 1.0 O h:LYS17 4.0 77.6 1.0 C h:LYS17 4.1 75.0 1.0 N h:PRO18 4.1 60.0 1.0 CA h:PRO18 4.1 57.9 1.0 CB h:ALA48 4.2 83.1 1.0 C h:CYS16 4.2 91.5 1.0 N h:LYS17 4.2 90.2 1.0 CB h:PRO18 4.4 56.1 1.0 CB h:CYS16 4.4 98.1 1.0 O h:CYS16 4.5 89.4 1.0 SG h:CYS21 4.5 48.9 1.0 CD h:PRO18 4.5 56.7 1.0 CA h:CYS16 4.6 0.0 1.0 CB h:ALA69 4.8 54.4 1.0 CA h:LYS17 4.8 89.6 1.0 N h:ALA48 4.9 86.5 1.0 SG h:CYS65 5.0 47.8 1.0

A.Heuer, M.Gerovac, C.Schmidt, S.Trowitzsch, A.Preis, P.Kotter, O.Berninghausen, T.Becker, R.Beckmann, R.Tampe. Structure of the 40S-ABCE1 Post-Splitting Complex in Ribosome Recycling and Translation Initiation. Nat. Struct. Mol. Biol. V. 24 453 2017.
ISSN: ESSN 1545-9985
PubMed: 28368393
DOI: 10.1038/NSMB.3396