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Iron in PDB 5lnk: Entire Ovine Respiratory Complex I

Other elements in 5lnk:

The structure of Entire Ovine Respiratory Complex I also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Iron Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Entire Ovine Respiratory Complex I (pdb code 5lnk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Entire Ovine Respiratory Complex I, PDB code: 5lnk:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in 5lnk

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Iron binding site 1 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:84.4
occ:1.00
FE1 1:SF4500 0.0 84.4 1.0
S4 1:SF4500 2.3 84.4 1.0
S2 1:SF4500 2.3 84.4 1.0
S3 1:SF4500 2.3 84.4 1.0
SG 1:CYS365 2.3 68.8 1.0
FE3 1:SF4500 2.7 84.4 1.0
FE4 1:SF4500 2.7 84.4 1.0
FE2 1:SF4500 2.7 84.4 1.0
OG 1:SER358 3.1 74.7 1.0
O 1:CYS359 3.3 72.4 1.0
CB 1:CYS365 3.3 68.8 1.0
S1 1:SF4500 3.9 84.4 1.0
OG1 1:THR403 4.3 68.4 1.0
N 1:CYS359 4.3 72.4 1.0
C 1:CYS359 4.3 72.4 1.0
O 1:CYS362 4.4 67.0 1.0
CB 1:CYS362 4.4 67.5 1.0
CB 1:SER358 4.5 74.7 1.0
N 1:CYS362 4.6 67.0 1.0
SG 1:CYS362 4.6 67.5 1.0
CA 1:CYS365 4.6 68.7 1.0
SG 1:CYS359 4.8 73.9 1.0
SG 1:CYS405 4.8 75.1 1.0
N 1:CYS365 4.9 68.7 1.0
CA 1:CYS359 4.9 72.4 1.0
N 1:ARG366 4.9 68.7 1.0
CA 1:CYS362 5.0 67.0 1.0

Iron binding site 2 out of 28 in 5lnk

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Iron binding site 2 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:84.4
occ:1.00
FE2 1:SF4500 0.0 84.4 1.0
S1 1:SF4500 2.3 84.4 1.0
S4 1:SF4500 2.3 84.4 1.0
S3 1:SF4500 2.3 84.4 1.0
SG 1:CYS405 2.3 75.1 1.0
FE4 1:SF4500 2.7 84.4 1.0
FE3 1:SF4500 2.7 84.4 1.0
FE1 1:SF4500 2.7 84.4 1.0
CB 1:CYS405 3.5 75.1 1.0
N 1:CYS405 3.8 69.6 1.0
S2 1:SF4500 3.9 84.4 1.0
CA 1:CYS405 4.2 69.6 1.0
OG1 1:THR403 4.3 68.4 1.0
CB 1:LEU407 4.5 75.4 1.0
N 1:GLY408 4.7 74.0 1.0
OG 1:SER358 4.7 74.7 1.0
CG 1:PRO203 4.7 79.2 1.0
SG 1:CYS359 4.7 73.9 1.0
C 1:CYS405 4.7 69.6 1.0
OE1 1:GLU188 4.8 91.6 1.0
OE2 1:GLU188 4.8 91.6 1.0
SG 1:CYS362 4.8 67.5 1.0
O 1:CYS405 4.9 69.6 1.0
SG 1:CYS365 4.9 68.8 1.0
CD2 1:LEU407 4.9 75.4 1.0
CB 1:ILE404 4.9 69.7 1.0
CD 1:PRO203 5.0 79.2 1.0

Iron binding site 3 out of 28 in 5lnk

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Iron binding site 3 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:84.4
occ:1.00
FE3 1:SF4500 0.0 84.4 1.0
S2 1:SF4500 2.3 84.4 1.0
S4 1:SF4500 2.3 84.4 1.0
S1 1:SF4500 2.3 84.4 1.0
SG 1:CYS362 2.3 67.5 1.0
FE1 1:SF4500 2.7 84.4 1.0
FE2 1:SF4500 2.7 84.4 1.0
FE4 1:SF4500 2.8 84.4 1.0
OG1 1:THR403 3.0 68.4 1.0
CB 1:CYS362 3.1 67.5 1.0
N 1:CYS362 3.6 67.0 1.0
S3 1:SF4500 3.9 84.4 1.0
CA 1:CYS362 3.9 67.0 1.0
CB 1:ILE404 3.9 69.7 1.0
N 1:ILE404 4.1 68.0 1.0
CG1 1:ILE404 4.3 69.7 1.0
N 1:CYS405 4.4 69.6 1.0
CB 1:THR403 4.4 68.4 1.0
CA 1:ILE404 4.5 68.0 1.0
CB 1:GLN361 4.6 72.2 1.0
SG 1:CYS365 4.6 68.8 1.0
SG 1:CYS405 4.7 75.1 1.0
O 1:CYS362 4.7 67.0 1.0
C 1:GLN361 4.7 67.0 1.0
C 1:CYS362 4.9 67.0 1.0
SG 1:CYS359 4.9 73.9 1.0
O 1:CYS359 4.9 72.4 1.0
OE1 1:GLN361 4.9 72.2 1.0

Iron binding site 4 out of 28 in 5lnk

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Iron binding site 4 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Fe500

b:84.4
occ:1.00
FE4 1:SF4500 0.0 84.4 1.0
S3 1:SF4500 2.3 84.4 1.0
S2 1:SF4500 2.3 84.4 1.0
S1 1:SF4500 2.3 84.4 1.0
SG 1:CYS359 2.3 73.9 1.0
FE2 1:SF4500 2.7 84.4 1.0
FE1 1:SF4500 2.7 84.4 1.0
FE3 1:SF4500 2.8 84.4 1.0
O 1:CYS359 3.3 72.4 1.0
CB 1:CYS359 3.6 73.9 1.0
C 1:CYS359 3.7 72.4 1.0
N 1:CYS359 3.7 72.4 1.0
CA 1:CYS359 3.8 72.4 1.0
S4 1:SF4500 3.9 84.4 1.0
CD 1:PRO203 4.1 79.2 1.0
N 1:GLN361 4.3 67.0 1.0
OG 1:SER358 4.4 74.7 1.0
CB 1:GLN361 4.5 72.2 1.0
N 1:GLY360 4.7 69.4 1.0
CG 1:PRO203 4.7 79.2 1.0
N 1:CYS362 4.7 67.0 1.0
OE1 1:GLN361 4.7 72.2 1.0
SG 1:CYS405 4.7 75.1 1.0
SG 1:CYS365 4.7 68.8 1.0
SG 1:CYS362 4.9 67.5 1.0
CG 1:GLN361 4.9 72.2 1.0
CA 1:GLN361 4.9 67.0 1.0
C 1:SER358 5.0 76.8 1.0

Iron binding site 5 out of 28 in 5lnk

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Iron binding site 5 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe300

b:84.4
occ:1.00
FE1 2:FES300 0.0 84.4 1.0
S2 2:FES300 2.2 84.4 1.0
S1 2:FES300 2.2 84.4 1.0
SG 2:CYS103 2.3 0.4 1.0
SG 2:CYS108 2.3 0.3 1.0
CB 2:CYS103 3.0 0.4 1.0
FE2 2:FES300 3.1 84.4 1.0
CB 2:CYS108 3.2 0.3 1.0
N 2:CYS108 4.4 0.2 1.0
CA 2:CYS103 4.4 0.2 1.0
CA 2:CYS108 4.4 0.2 1.0
O 2:ALA147 4.4 0.5 1.0
O 2:CYS103 4.5 0.2 1.0
CA 2:CYS144 4.5 98.8 1.0
SG 2:CYS144 4.6 0.6 1.0
OG1 2:THR105 4.6 97.2 1.0
C 2:CYS103 4.7 0.2 1.0
CG 2:MET153 4.7 0.4 1.0
N 2:LEU145 4.7 0.7 1.0
SG 2:CYS148 4.8 0.5 1.0
CB 2:CYS144 4.9 0.6 1.0

Iron binding site 6 out of 28 in 5lnk

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Iron binding site 6 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
2:Fe300

b:84.4
occ:1.00
FE2 2:FES300 0.0 84.4 1.0
S1 2:FES300 2.2 84.4 1.0
S2 2:FES300 2.2 84.4 1.0
SG 2:CYS148 2.3 0.5 1.0
SG 2:CYS144 2.3 0.6 1.0
FE1 2:FES300 3.1 84.4 1.0
N 2:GLY146 3.5 0.1 1.0
CB 2:CYS144 3.7 0.6 1.0
N 1:GLY103 3.7 0.3 1.0
CB 2:CYS148 3.8 0.5 1.0
CA 1:PRO102 3.9 98.0 1.0
CA 2:GLY146 3.9 0.1 1.0
C 2:GLY146 4.0 0.1 1.0
N 2:LEU145 4.1 0.7 1.0
CA 2:CYS144 4.2 98.8 1.0
O 2:ALA147 4.2 0.5 1.0
C 1:PRO102 4.2 98.0 1.0
N 2:ALA147 4.3 0.5 1.0
CA 2:CYS148 4.3 0.3 1.0
C 2:ALA147 4.3 0.5 1.0
CB 1:PRO102 4.5 97.9 1.0
O 2:GLY146 4.5 0.1 1.0
C 2:CYS144 4.5 98.8 1.0
SG 2:CYS103 4.5 0.4 1.0
N 2:CYS148 4.6 0.3 1.0
O 1:GLU101 4.6 95.7 1.0
C 2:LEU145 4.7 0.7 1.0
CA 1:GLY103 4.7 0.3 1.0
SG 2:CYS108 4.8 0.3 1.0
N 1:THR104 4.9 0.9 1.0
N 1:PRO102 5.0 98.0 1.0
CA 2:LEU145 5.0 0.7 1.0
CA 2:ALA147 5.0 0.5 1.0

Iron binding site 7 out of 28 in 5lnk

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Iron binding site 7 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:84.4
occ:1.00
FE1 3:SF4801 0.0 84.4 1.0
S2 3:SF4801 2.3 84.4 1.0
S3 3:SF4801 2.3 84.4 1.0
S4 3:SF4801 2.3 84.4 1.0
SG 3:CYS114 2.3 63.8 1.0
FE4 3:SF4801 2.6 84.4 1.0
FE3 3:SF4801 2.7 84.4 1.0
FE2 3:SF4801 2.7 84.4 1.0
CB 3:CYS114 3.2 63.8 1.0
S1 3:SF4801 3.9 84.4 1.0
NE2 3:HIS101 4.3 53.9 1.0
CB 3:LEU116 4.3 57.3 1.0
N 3:GLY206 4.4 56.0 1.0
CG 3:GLN117 4.5 56.1 1.0
NE2 3:GLN117 4.6 56.1 1.0
CA 3:CYS114 4.6 60.2 1.0
CB 3:VAL205 4.7 54.8 1.0
CD1 3:LEU116 4.7 57.3 1.0
SG 3:CYS108 4.7 59.4 1.0
CA 3:VAL205 4.7 54.6 1.0
CD 3:GLN117 4.9 56.1 1.0
SG 3:CYS105 4.9 56.6 1.0
CG1 3:VAL205 4.9 54.8 1.0
CG 3:LEU116 5.0 57.3 1.0
C 3:CYS114 5.0 60.2 1.0

Iron binding site 8 out of 28 in 5lnk

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Iron binding site 8 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:84.4
occ:1.00
FE2 3:SF4801 0.0 84.4 1.0
S1 3:SF4801 2.3 84.4 1.0
S3 3:SF4801 2.3 84.4 1.0
S4 3:SF4801 2.3 84.4 1.0
SG 3:CYS105 2.3 56.6 1.0
FE3 3:SF4801 2.7 84.4 1.0
FE4 3:SF4801 2.7 84.4 1.0
FE1 3:SF4801 2.7 84.4 1.0
NE2 3:GLN117 3.3 56.1 1.0
CB 3:CYS105 3.5 56.6 1.0
CA 3:CYS105 3.7 54.4 1.0
N 3:CYS105 3.8 54.4 1.0
S2 3:SF4801 3.9 84.4 1.0
CD 3:GLN117 4.2 56.1 1.0
CG 3:GLN117 4.3 56.1 1.0
CE 4:MET342 4.5 55.4 1.0
NE2 3:HIS101 4.6 53.9 1.0
C 3:ASP104 4.7 55.5 1.0
SG 3:CYS108 4.8 59.4 1.0
CB 3:CYS108 4.8 59.4 1.0
SG 3:CYS114 4.9 63.8 1.0
CD2 3:HIS101 4.9 53.9 1.0

Iron binding site 9 out of 28 in 5lnk

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Iron binding site 9 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:84.4
occ:1.00
FE3 3:SF4801 0.0 84.4 1.0
NE2 3:HIS101 2.1 53.9 1.0
S4 3:SF4801 2.3 84.4 1.0
S1 3:SF4801 2.3 84.4 1.0
S2 3:SF4801 2.3 84.4 1.0
FE2 3:SF4801 2.7 84.4 1.0
FE1 3:SF4801 2.7 84.4 1.0
FE4 3:SF4801 2.7 84.4 1.0
CD2 3:HIS101 2.9 53.9 1.0
CE1 3:HIS101 3.2 53.9 1.0
S3 3:SF4801 3.9 84.4 1.0
CG 3:HIS101 4.1 53.9 1.0
CD 3:ARG152 4.2 56.9 1.0
ND1 3:HIS101 4.2 53.9 1.0
CE 4:MET342 4.3 55.4 1.0
CG 3:ARG152 4.5 56.9 1.0
O 3:PRO102 4.6 55.3 1.0
SG 3:CYS105 4.7 56.6 1.0
CB 3:ARG152 4.7 56.9 1.0
CD1 3:LEU116 4.8 57.3 1.0
SG 3:CYS114 4.8 63.8 1.0
SG 3:CYS108 4.9 59.4 1.0

Iron binding site 10 out of 28 in 5lnk

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Iron binding site 10 out of 28 in the Entire Ovine Respiratory Complex I


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Entire Ovine Respiratory Complex I within 5.0Å range:
probe atom residue distance (Å) B Occ
3:Fe801

b:84.4
occ:1.00
FE4 3:SF4801 0.0 84.4 1.0
S2 3:SF4801 2.3 84.4 1.0
S1 3:SF4801 2.3 84.4 1.0
S3 3:SF4801 2.3 84.4 1.0
SG 3:CYS108 2.3 59.4 1.0
FE1 3:SF4801 2.6 84.4 1.0
FE2 3:SF4801 2.7 84.4 1.0
FE3 3:SF4801 2.7 84.4 1.0
CB 3:CYS108 3.1 59.4 1.0
CD 3:ARG152 3.7 56.9 1.0
S4 3:SF4801 3.9 84.4 1.0
N 3:GLY206 4.2 56.0 1.0
CA 3:GLY206 4.3 56.0 1.0
NE 3:ARG152 4.4 56.9 1.0
CA 3:CYS108 4.6 57.1 1.0
SG 3:CYS114 4.6 63.8 1.0
CA 3:CYS105 4.7 54.4 1.0
NE2 3:HIS101 4.7 53.9 1.0
N 3:CYS105 4.7 54.4 1.0
CB 3:ASP104 4.7 56.8 1.0
CB 3:CYS114 4.8 63.8 1.0
CG 3:ARG152 4.8 56.9 1.0
SG 3:CYS105 4.8 56.6 1.0
C 3:ASP104 4.9 55.5 1.0

Reference:

K.Fiedorczuk, J.A.Letts, G.Degliesposti, K.Kaszuba, M.Skehel, L.A.Sazanov. Atomic Structure of the Entire Mammalian Mitochondrial Complex I. Nature V. 538 406 2016.
ISSN: ESSN 1476-4687
PubMed: 27595392
DOI: 10.1038/NATURE19794
Page generated: Sun Dec 13 16:07:26 2020

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