Iron in PDB 5lx7: Cys-Gly Dipeptidase Glij Mutant D38N

Enzymatic activity of Cys-Gly Dipeptidase Glij Mutant D38N

All present enzymatic activity of Cys-Gly Dipeptidase Glij Mutant D38N:
3.4.13.19;

Protein crystallography data

The structure of Cys-Gly Dipeptidase Glij Mutant D38N, PDB code: 5lx7 was solved by E.M.Huber, M.Groll, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.95
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 99.680, 99.680, 107.560, 90.00, 90.00, 120.00
R / Rfree (%) 16.4 / 19.5

Iron Binding Sites:

The binding sites of Iron atom in the Cys-Gly Dipeptidase Glij Mutant D38N (pdb code 5lx7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Cys-Gly Dipeptidase Glij Mutant D38N, PDB code: 5lx7:

Iron binding site 1 out of 1 in 5lx7

Go back to Iron Binding Sites List in 5lx7
Iron binding site 1 out of 1 in the Cys-Gly Dipeptidase Glij Mutant D38N


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Cys-Gly Dipeptidase Glij Mutant D38N within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe401

b:46.5
occ:1.00
OE2 A:GLU134 1.9 44.6 1.0
NE2 A:HIS224 2.3 35.3 1.0
NE2 A:HIS203 2.5 44.7 1.0
N A:TRS405 2.5 54.0 1.0
O2 A:TRS405 2.5 46.0 1.0
O1 A:TRS405 2.6 59.2 1.0
CD A:GLU134 3.0 42.5 1.0
CD2 A:HIS203 3.1 43.8 1.0
CE1 A:HIS224 3.2 34.9 1.0
C A:TRS405 3.3 55.2 1.0
CD2 A:HIS224 3.4 35.4 1.0
C2 A:TRS405 3.5 54.3 1.0
OE1 A:GLU134 3.5 45.5 1.0
C1 A:TRS405 3.5 57.0 1.0
CE1 A:HIS203 3.6 45.1 1.0
NE2 A:HIS23 3.9 35.9 1.0
NH1 A:ARG235 4.2 42.6 0.5
OD2 A:ASP294 4.2 43.8 1.0
CG A:GLU134 4.3 40.7 1.0
CD2 A:HIS161 4.3 46.2 1.0
CG A:HIS203 4.3 43.0 1.0
ND1 A:HIS224 4.3 34.5 1.0
NE2 A:HIS161 4.3 46.1 1.0
CG A:HIS224 4.4 34.6 1.0
CD2 A:HIS23 4.5 34.6 1.0
ND1 A:HIS203 4.5 45.0 1.0
CE1 A:HIS23 4.6 35.1 1.0
NH1 A:ARG235 4.6 42.8 0.5
OD1 A:ASP294 4.6 39.5 1.0
CG A:ASP294 4.6 39.8 1.0
C3 A:TRS405 4.7 56.2 1.0
CZ A:ARG235 4.8 42.7 0.5
O A:HOH628 4.9 49.7 1.0

Reference:

A.Marion, M.Groll, D.H.Scharf, K.Scherlach, M.Glaser, H.Sievers, M.Schuster, C.Hertweck, A.A.Brakhage, I.Antes, E.M.Huber. Gliotoxin Biosynthesis: Structure, Mechanism, and Metal Promiscuity of Carboxypeptidase Glij. Acs Chem. Biol. V. 12 1874 2017.
ISSN: ESSN 1554-8937
PubMed: 28525266
DOI: 10.1021/ACSCHEMBIO.6B00847
Page generated: Sun Dec 13 16:07:55 2020

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