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Iron in PDB 5mdk: Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Enzymatic activity of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
All present enzymatic activity of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3):
1.12.99.6;
1.12.99.6;
Protein crystallography data
The structure of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3), PDB code: 5mdk
was solved by
A.Schmidt,
J.Kalms,
P.Scheerer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
| Resolution Low / High (Å) | 47.78 / 1.50 |
| Space group | P 21 21 21 |
| Cell size a, b, c (Å), α, β, γ (°) | 73.110, 95.567, 119.828, 90.00, 90.00, 90.00 |
| R / Rfree (%) | 12.5 / 15.3 |
Other elements in 5mdk:
The structure of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) also contains other interesting chemical elements:
| Nickel | (Ni) | 1 atom |
| Magnesium | (Mg) | 1 atom |
| Chlorine | (Cl) | 5 atoms |
Iron Binding Sites:
Pages:
>>> Page 1 <<< Page 2, Binding sites: 11 - 12;Binding sites:
The binding sites of Iron atom in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) (pdb code 5mdk). This binding sites where shown within 5.0 Angstroms radius around Iron atom.In total 12 binding sites of Iron where determined in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3), PDB code: 5mdk:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;
Iron binding site 1 out of 12 in 5mdk
Go back to
Iron Binding Sites List in 5mdk
Iron binding site 1 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 2 out of 12 in 5mdk
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Iron Binding Sites List in 5mdk
Iron binding site 2 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 3 out of 12 in 5mdk
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Iron Binding Sites List in 5mdk
Iron binding site 3 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 4 out of 12 in 5mdk
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Iron Binding Sites List in 5mdk
Iron binding site 4 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 5 out of 12 in 5mdk
Go back to
Iron Binding Sites List in 5mdk
Iron binding site 5 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 6 out of 12 in 5mdk
Go back to
Iron Binding Sites List in 5mdk
Iron binding site 6 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 7 out of 12 in 5mdk
Go back to
Iron Binding Sites List in 5mdk
Iron binding site 7 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 8 out of 12 in 5mdk
Go back to
Iron Binding Sites List in 5mdk
Iron binding site 8 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 9 out of 12 in 5mdk
Go back to
Iron Binding Sites List in 5mdk
Iron binding site 9 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Iron binding site 10 out of 12 in 5mdk
Go back to
Iron Binding Sites List in 5mdk
Iron binding site 10 out
of 12 in the Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3)
Mono view
Stereo pair view
Mono view
Stereo pair view
A full contact list of Iron with other atoms in the Fe binding
site number 10 of Crystal Structure of An O2-Tolerant [Nife]-Hydrogenase From Ralstonia Eutropha in Its As-Isolated Form (Oxidized State - State 3) within 5.0Å range:
|
Reference:
J.Kalms,
A.Schmidt,
S.Frielingsdorf,
T.Utesch,
G.Gotthard,
D.Von Stetten,
P.Van Der Linden,
A.Royant,
M.A.Mroginski,
P.Carpentier,
O.Lenz,
P.Scheerer.
Tracking the Route of Molecular Oxygen in O2-Tolerant Membrane-Bound [Nife] Hydrogenase. Proc. Natl. Acad. Sci. V. 115 E2229 2018U.S.A..
ISSN: ESSN 1091-6490
PubMed: 29463722
DOI: 10.1073/PNAS.1712267115
Page generated: Tue Aug 5 23:53:10 2025
ISSN: ESSN 1091-6490
PubMed: 29463722
DOI: 10.1073/PNAS.1712267115
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