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Iron in PDB 5mxy: KUSTC0563 C-Type Cytochrome

Protein crystallography data

The structure of KUSTC0563 C-Type Cytochrome, PDB code: 5mxy was solved by A.Mohd, T.Barends, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.14 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 47.820, 47.820, 99.930, 90.00, 90.00, 90.00
R / Rfree (%) 19.9 / 23

Other elements in 5mxy:

The structure of KUSTC0563 C-Type Cytochrome also contains other interesting chemical elements:

Zinc (Zn) 10 atoms

Iron Binding Sites:

The binding sites of Iron atom in the KUSTC0563 C-Type Cytochrome (pdb code 5mxy). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the KUSTC0563 C-Type Cytochrome, PDB code: 5mxy:

Iron binding site 1 out of 1 in 5mxy

Go back to Iron Binding Sites List in 5mxy
Iron binding site 1 out of 1 in the KUSTC0563 C-Type Cytochrome


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of KUSTC0563 C-Type Cytochrome within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe200

b:37.6
occ:1.00
FE A:HEC200 0.0 37.6 1.0
NE2 A:HIS47 2.1 39.8 1.0
NB A:HEC200 2.1 37.5 1.0
NC A:HEC200 2.1 37.7 1.0
ND A:HEC200 2.1 38.0 1.0
NA A:HEC200 2.1 36.9 1.0
SD A:MET91 2.1 37.6 1.0
CE1 A:HIS47 3.1 38.3 1.0
CD2 A:HIS47 3.1 38.7 1.0
C4C A:HEC200 3.1 37.6 1.0
C4B A:HEC200 3.1 37.2 1.0
C1B A:HEC200 3.1 36.8 1.0
C4A A:HEC200 3.1 36.7 1.0
C1D A:HEC200 3.1 38.2 1.0
C1C A:HEC200 3.1 37.6 1.0
C4D A:HEC200 3.1 38.0 1.0
C1A A:HEC200 3.1 37.0 1.0
CG A:MET91 3.3 38.2 1.0
CE A:MET91 3.3 35.6 1.0
CHD A:HEC200 3.4 36.0 1.0
CHB A:HEC200 3.4 33.8 1.0
CHC A:HEC200 3.4 35.6 1.0
CHA A:HEC200 3.5 36.6 1.0
CB A:MET91 4.1 40.6 1.0
ND1 A:HIS47 4.2 39.3 1.0
CG A:HIS47 4.2 40.5 1.0
C3B A:HEC200 4.4 36.9 1.0
C3C A:HEC200 4.4 37.3 1.0
C2D A:HEC200 4.4 38.2 1.0
C2B A:HEC200 4.4 36.5 1.0
C3A A:HEC200 4.4 36.1 1.0
C3D A:HEC200 4.4 37.1 1.0
C2C A:HEC200 4.4 38.2 1.0
C2A A:HEC200 4.4 36.4 1.0

Reference:

A.Mohd, T.Barends. Structure and Function of the C-Type Cytochrome KUSTC0563 From the Anammox Organism Kuenenia Stuttgartiensis To Be Published.
Page generated: Sun Dec 13 16:09:01 2020

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