Atomistry » Iron » PDB 5mms-5o10 » 5n07
Atomistry »
  Iron »
    PDB 5mms-5o10 »
      5n07 »

Iron in PDB 5n07: Structure of the [4FE-4S] Form of the No Response Regulator Nsrr

Protein crystallography data

The structure of Structure of the [4FE-4S] Form of the No Response Regulator Nsrr, PDB code: 5n07 was solved by A.Volbeda, J.C.Fontecilla-Camps, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.95
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 78.760, 78.760, 93.260, 90.00, 90.00, 120.00
R / Rfree (%) 19.5 / 22.7

Other elements in 5n07:

The structure of Structure of the [4FE-4S] Form of the No Response Regulator Nsrr also contains other interesting chemical elements:

Chlorine (Cl) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Structure of the [4FE-4S] Form of the No Response Regulator Nsrr (pdb code 5n07). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 4 binding sites of Iron where determined in the Structure of the [4FE-4S] Form of the No Response Regulator Nsrr, PDB code: 5n07:
Jump to Iron binding site number: 1; 2; 3; 4;

Iron binding site 1 out of 4 in 5n07

Go back to Iron Binding Sites List in 5n07
Iron binding site 1 out of 4 in the Structure of the [4FE-4S] Form of the No Response Regulator Nsrr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the [4FE-4S] Form of the No Response Regulator Nsrr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:70.4
occ:1.00
FE1 A:SF4201 0.0 70.4 1.0
SG A:CYS93 2.3 79.1 1.0
S2 A:SF4201 2.3 75.2 1.0
S3 A:SF4201 2.3 67.7 1.0
S4 A:SF4201 2.3 72.6 1.0
FE3 A:SF4201 2.6 72.1 1.0
FE4 A:SF4201 2.6 73.8 1.0
FE2 A:SF4201 2.7 68.0 1.0
CB A:CYS93 3.1 80.5 1.0
CA A:CYS93 3.8 82.9 1.0
S1 A:SF4201 3.8 72.6 1.0
CG1 A:VAL91 4.3 81.3 1.0
CD A:ARG108 4.4 81.1 1.0
N A:CYS93 4.5 82.0 1.0
CG2 A:VAL91 4.5 86.7 1.0
CB A:ARG108 4.6 80.8 1.0
SG A:CYS105 4.6 69.9 1.0
CB A:CYS99 4.7 83.5 1.0
SG A:CYS99 4.7 77.7 1.0
CG A:ARG108 4.9 82.4 1.0
O A:HOH309 4.9 79.0 1.0

Iron binding site 2 out of 4 in 5n07

Go back to Iron Binding Sites List in 5n07
Iron binding site 2 out of 4 in the Structure of the [4FE-4S] Form of the No Response Regulator Nsrr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the [4FE-4S] Form of the No Response Regulator Nsrr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:68.0
occ:1.00
FE2 A:SF4201 0.0 68.0 1.0
S1 A:SF4201 2.2 72.6 1.0
S4 A:SF4201 2.3 72.6 1.0
S3 A:SF4201 2.3 67.7 1.0
FE3 A:SF4201 2.6 72.1 1.0
FE4 A:SF4201 2.7 73.8 1.0
FE1 A:SF4201 2.7 70.4 1.0
S2 A:SF4201 3.9 75.2 1.0
CG2 A:VAL91 4.1 86.7 1.0
CD2 A:LEU107 4.2 68.5 1.0
SG A:CYS99 4.7 77.7 1.0
SG A:CYS93 4.8 79.1 1.0
SG A:CYS105 4.8 69.9 1.0
CG A:LEU107 4.9 68.5 1.0

Iron binding site 3 out of 4 in 5n07

Go back to Iron Binding Sites List in 5n07
Iron binding site 3 out of 4 in the Structure of the [4FE-4S] Form of the No Response Regulator Nsrr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Structure of the [4FE-4S] Form of the No Response Regulator Nsrr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:72.1
occ:1.00
FE3 A:SF4201 0.0 72.1 1.0
S1 A:SF4201 2.3 72.6 1.0
S4 A:SF4201 2.3 72.6 1.0
SG A:CYS99 2.3 77.7 1.0
S2 A:SF4201 2.3 75.2 1.0
FE1 A:SF4201 2.6 70.4 1.0
FE4 A:SF4201 2.6 73.8 1.0
FE2 A:SF4201 2.6 68.0 1.0
CB A:CYS99 3.0 83.5 1.0
S3 A:SF4201 3.8 67.7 1.0
CB A:LEU101 4.2 79.0 1.0
CA A:CYS99 4.5 87.3 1.0
SG A:CYS105 4.5 69.9 1.0
SG A:CYS93 4.6 79.1 1.0
CB A:CYS93 4.7 80.5 1.0
CD1 A:LEU101 4.8 76.2 1.0
N A:ARG102 4.8 80.3 1.0
CG A:LEU101 4.8 82.7 1.0
N A:LEU101 4.9 86.4 1.0
CA A:LEU101 4.9 85.9 1.0
C A:CYS99 5.0 88.3 1.0
CA A:CYS93 5.0 82.9 1.0
C A:LEU101 5.0 83.5 1.0

Iron binding site 4 out of 4 in 5n07

Go back to Iron Binding Sites List in 5n07
Iron binding site 4 out of 4 in the Structure of the [4FE-4S] Form of the No Response Regulator Nsrr


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Structure of the [4FE-4S] Form of the No Response Regulator Nsrr within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:73.8
occ:1.00
FE4 A:SF4201 0.0 73.8 1.0
SG A:CYS105 2.2 69.9 1.0
S3 A:SF4201 2.3 67.7 1.0
S2 A:SF4201 2.3 75.2 1.0
S1 A:SF4201 2.3 72.6 1.0
FE1 A:SF4201 2.6 70.4 1.0
FE3 A:SF4201 2.6 72.1 1.0
FE2 A:SF4201 2.7 68.0 1.0
CB A:CYS105 3.4 74.3 1.0
S4 A:SF4201 3.9 72.6 1.0
N A:ARG108 4.1 70.0 1.0
CB A:ARG108 4.2 80.8 1.0
CB A:LEU107 4.4 69.6 1.0
CD2 A:LEU107 4.5 68.5 1.0
CB A:LEU101 4.6 79.0 1.0
CA A:ARG108 4.6 73.5 1.0
SG A:CYS93 4.6 79.1 1.0
SG A:CYS99 4.7 77.7 1.0
CG A:LEU107 4.7 68.5 1.0
CA A:CYS105 4.7 75.3 1.0
CD1 A:LEU101 4.9 76.2 1.0
C A:LEU107 4.9 69.6 1.0

Reference:

A.Volbeda, E.L.Dodd, C.Darnault, J.C.Crack, O.Renoux, M.I.Hutchings, N.E.Le Brun, J.C.Fontecilla-Camps. Crystal Structures of the No Sensor Nsrr Reveal How Its Iron-Sulfur Cluster Modulates Dna Binding. Nat Commun V. 8 15052 2017.
ISSN: ESSN 2041-1723
PubMed: 28425466
DOI: 10.1038/NCOMMS15052
Page generated: Tue Aug 6 06:03:10 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy