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Iron in PDB 5nvi: Crystal Structure of Murine Neuroglobin Under 50 Bar Argon Pressure

Protein crystallography data

The structure of Crystal Structure of Murine Neuroglobin Under 50 Bar Argon Pressure, PDB code: 5nvi was solved by N.Colloc'h, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.60
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 89.198, 89.198, 115.348, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 23

Other elements in 5nvi:

The structure of Crystal Structure of Murine Neuroglobin Under 50 Bar Argon Pressure also contains other interesting chemical elements:

Argon (Ar) 1 atom

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Murine Neuroglobin Under 50 Bar Argon Pressure (pdb code 5nvi). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Murine Neuroglobin Under 50 Bar Argon Pressure, PDB code: 5nvi:

Iron binding site 1 out of 1 in 5nvi

Go back to Iron Binding Sites List in 5nvi
Iron binding site 1 out of 1 in the Crystal Structure of Murine Neuroglobin Under 50 Bar Argon Pressure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Murine Neuroglobin Under 50 Bar Argon Pressure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:15.8
occ:1.00
FE A:HEM201 0.0 15.8 1.0
ND A:HEM201 2.0 14.5 1.0
NA A:HEM201 2.0 17.5 1.0
NC A:HEM201 2.1 18.3 1.0
NB A:HEM201 2.1 15.3 1.0
NE2 A:HIS64 2.1 16.4 1.0
NE2 A:HIS96 2.1 20.5 1.0
C1D A:HEM201 3.0 15.5 1.0
C4D A:HEM201 3.0 16.6 1.0
C1B A:HEM201 3.0 17.4 1.0
C4B A:HEM201 3.0 18.1 1.0
C1A A:HEM201 3.0 17.5 1.0
C4A A:HEM201 3.0 16.9 1.0
CE1 A:HIS64 3.0 13.8 1.0
CE1 A:HIS96 3.1 21.7 1.0
CD2 A:HIS64 3.1 13.9 1.0
C4C A:HEM201 3.1 15.8 1.0
C1C A:HEM201 3.1 17.6 1.0
CD2 A:HIS96 3.2 19.1 1.0
CHC A:HEM201 3.4 17.4 1.0
CHB A:HEM201 3.4 17.8 1.0
CHD A:HEM201 3.4 16.7 1.0
CHA A:HEM201 3.4 16.0 1.0
ND1 A:HIS64 4.1 13.9 1.0
ND1 A:HIS96 4.2 21.2 1.0
CG A:HIS64 4.2 14.2 1.0
C2A A:HEM201 4.2 17.5 1.0
C2B A:HEM201 4.2 18.6 1.0
C2D A:HEM201 4.2 16.8 1.0
C3B A:HEM201 4.2 18.7 1.0
C3D A:HEM201 4.2 17.2 1.0
C3A A:HEM201 4.2 18.8 1.0
CG A:HIS96 4.3 21.4 1.0
C2C A:HEM201 4.3 18.1 1.0
C3C A:HEM201 4.3 18.7 1.0
CG2 A:VAL68 4.9 16.7 1.0

Reference:

N.Colloc'h, P.Carpentier, L.C.Montemiglio, B.Vallone, T.Prange. Mapping Hydrophobic Tunnels and Cavities in Neuroglobin with Noble Gas Under Pressure. Biophys. J. V. 113 2199 2017.
ISSN: ESSN 1542-0086
PubMed: 29108649
DOI: 10.1016/J.BPJ.2017.10.014
Page generated: Sun Dec 13 16:09:35 2020

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