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Iron in PDB 5o1k: Crystal Structure of Murine Neuroglobin Mutant V140W Under 20 Bar Xenon Pressure

Protein crystallography data

The structure of Crystal Structure of Murine Neuroglobin Mutant V140W Under 20 Bar Xenon Pressure, PDB code: 5o1k was solved by N.Colloc'h, T.Prange, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.05
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 89.257, 89.257, 115.416, 90.00, 90.00, 120.00
R / Rfree (%) 15.2 / 20.2

Other elements in 5o1k:

The structure of Crystal Structure of Murine Neuroglobin Mutant V140W Under 20 Bar Xenon Pressure also contains other interesting chemical elements:

Xenon (Xe) 6 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Murine Neuroglobin Mutant V140W Under 20 Bar Xenon Pressure (pdb code 5o1k). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Murine Neuroglobin Mutant V140W Under 20 Bar Xenon Pressure, PDB code: 5o1k:

Iron binding site 1 out of 1 in 5o1k

Go back to Iron Binding Sites List in 5o1k
Iron binding site 1 out of 1 in the Crystal Structure of Murine Neuroglobin Mutant V140W Under 20 Bar Xenon Pressure


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Murine Neuroglobin Mutant V140W Under 20 Bar Xenon Pressure within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:26.2
occ:1.00
FE A:HEM201 0.0 26.2 1.0
NA A:HEM201 1.9 23.6 1.0
ND A:HEM201 2.0 28.4 1.0
NC A:HEM201 2.0 25.5 1.0
NE2 A:HIS64 2.1 24.2 1.0
NE2 A:HIS96 2.1 29.0 1.0
NB A:HEM201 2.1 25.5 1.0
C1A A:HEM201 3.0 27.3 1.0
C4D A:HEM201 3.0 23.7 1.0
CE1 A:HIS96 3.0 29.9 1.0
C1D A:HEM201 3.0 26.9 1.0
C4B A:HEM201 3.0 24.1 1.0
C4A A:HEM201 3.0 29.8 1.0
CE1 A:HIS64 3.1 24.0 1.0
C1C A:HEM201 3.1 30.1 1.0
C4C A:HEM201 3.1 28.2 1.0
C1B A:HEM201 3.1 24.0 1.0
CD2 A:HIS64 3.1 21.7 1.0
CD2 A:HIS96 3.2 31.5 1.0
CHC A:HEM201 3.3 22.5 1.0
CHA A:HEM201 3.3 23.4 1.0
CHB A:HEM201 3.5 24.8 1.0
CHD A:HEM201 3.5 26.2 1.0
ND1 A:HIS96 4.2 29.0 1.0
ND1 A:HIS64 4.2 24.1 1.0
C2A A:HEM201 4.2 26.6 1.0
C3A A:HEM201 4.2 25.2 1.0
CG A:HIS64 4.2 22.3 1.0
C3C A:HEM201 4.2 25.8 1.0
C2C A:HEM201 4.3 31.3 1.0
CG A:HIS96 4.3 28.1 1.0
C2D A:HEM201 4.3 29.4 1.0
C3D A:HEM201 4.3 27.3 1.0
C3B A:HEM201 4.3 30.1 1.0
C2B A:HEM201 4.3 29.9 1.0

Reference:

N.Colloc'h, P.Carpentier, L.C.Montemiglio, B.Vallone, T.Prange. Mapping Hydrophobic Tunnels and Cavities in Neuroglobin with Noble Gas Under Pressure. Biophys. J. V. 113 2199 2017.
ISSN: ESSN 1542-0086
PubMed: 29108649
DOI: 10.1016/J.BPJ.2017.10.014
Page generated: Sun Dec 13 16:09:40 2020

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