Iron in PDB 5o31: Mitochondrial Complex I in the Deactive State

All present enzymatic activity of Mitochondrial Complex I in the Deactive State:
1.6.5.3; 1.6.99.3;

The structure of Mitochondrial Complex I in the Deactive State also contains other interesting chemical elements:

Zinc

(Zn)

1 atom

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Iron atom in the Mitochondrial Complex I in the Deactive State (pdb code 5o31). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 28 binding sites of Iron where determined in the Mitochondrial Complex I in the Deactive State, PDB code: 5o31:
Jump to Iron binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Iron binding site 1 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:23.0 occ:1.00 FE1 B:SF4201 0.0 23.0 1.0 S2 B:SF4201 2.3 23.2 1.0 S3 B:SF4201 2.3 23.3 1.0 S4 B:SF4201 2.3 23.3 1.0 SG B:CYS119 2.3 23.0 1.0 FE4 B:SF4201 2.7 23.2 1.0 FE3 B:SF4201 2.7 23.3 1.0 FE2 B:SF4201 2.7 23.3 1.0 CB B:CYS119 3.2 22.6 1.0 S1 B:SF4201 3.9 23.4 1.0 N B:CYS119 4.0 22.4 1.0 OG1 B:THR91 4.2 29.1 1.0 CA B:CYS119 4.2 22.3 1.0 OG B:SER118 4.5 22.6 1.0 CA B:GLY90 4.6 30.0 1.0 SG B:CYS149 4.8 23.3 1.0 SG B:CYS54 4.8 24.0 1.0 SG B:CYS55 4.8 23.9 1.0 N B:THR91 4.8 29.4 1.0

Iron binding site 2 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:23.3 occ:1.00 FE2 B:SF4201 0.0 23.3 1.0 S1 B:SF4201 2.3 23.4 1.0 S4 B:SF4201 2.3 23.3 1.0 S3 B:SF4201 2.3 23.3 1.0 SG B:CYS55 2.3 23.9 1.0 FE3 B:SF4201 2.7 23.3 1.0 FE1 B:SF4201 2.7 23.0 1.0 FE4 B:SF4201 2.7 23.2 1.0 CB B:CYS55 3.3 24.5 1.0 N B:CYS55 3.7 25.1 1.0 CA B:CYS55 3.8 25.1 1.0 S2 B:SF4201 3.9 23.2 1.0 CA B:GLY90 4.3 30.0 1.0 CA B:GLY117 4.5 23.3 1.0 C B:CYS54 4.6 25.1 1.0 SG B:CYS54 4.8 24.0 1.0 SG B:CYS119 4.8 23.0 1.0 SG B:CYS149 4.8 23.3 1.0 CA B:CYS149 4.9 23.5 1.0 N B:GLY90 4.9 30.4 1.0 CD B:PRO151 4.9 25.8 1.0 CB B:CYS54 4.9 24.6 1.0 N B:CYS54 5.0 25.8 1.0 CB B:ALA53 5.0 27.5 1.0 N B:SER118 5.0 22.7 1.0 CB B:CYS119 5.0 22.6 1.0

Iron binding site 3 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:23.3 occ:1.00 FE3 B:SF4201 0.0 23.3 1.0 S4 B:SF4201 2.3 23.3 1.0 S1 B:SF4201 2.3 23.4 1.0 S2 B:SF4201 2.3 23.2 1.0 SG B:CYS54 2.3 24.0 1.0 FE2 B:SF4201 2.7 23.3 1.0 FE1 B:SF4201 2.7 23.0 1.0 FE4 B:SF4201 2.7 23.2 1.0 CB B:CYS54 3.2 24.6 1.0 N B:CYS54 3.9 25.8 1.0 S3 B:SF4201 3.9 23.3 1.0 CA B:CYS54 4.0 25.2 1.0 N B:CYS55 4.0 25.1 1.0 C B:CYS54 4.3 25.1 1.0 CG D:ARG105 4.5 28.2 1.0 CE1 D:HIS190 4.7 33.6 1.0 SG B:CYS55 4.8 23.9 1.0 SG B:CYS119 4.8 23.0 1.0 SG B:CYS149 4.8 23.3 1.0 NE2 D:HIS190 5.0 33.6 1.0 CB D:ARG105 5.0 28.4 1.0

Iron binding site 4 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ B:Fe201 b:23.2 occ:1.00 FE4 B:SF4201 0.0 23.2 1.0 S3 B:SF4201 2.3 23.3 1.0 S2 B:SF4201 2.3 23.2 1.0 S1 B:SF4201 2.3 23.4 1.0 SG B:CYS149 2.3 23.3 1.0 FE1 B:SF4201 2.7 23.0 1.0 FE2 B:SF4201 2.7 23.3 1.0 FE3 B:SF4201 2.7 23.3 1.0 CB B:CYS149 3.4 23.4 1.0 CA B:CYS149 3.7 23.5 1.0 S4 B:SF4201 3.9 23.3 1.0 CD B:PRO150 3.9 24.4 1.0 N B:PRO150 4.2 24.3 1.0 NE D:ARG105 4.3 28.0 1.0 OG B:SER118 4.3 22.6 1.0 C B:CYS149 4.4 23.9 1.0 SG B:CYS119 4.8 23.0 1.0 CG D:ARG105 4.8 28.2 1.0 CD D:ARG105 4.8 28.0 1.0 SG B:CYS55 4.8 23.9 1.0 SG B:CYS54 4.8 24.0 1.0 CG2 I:ILE117 4.8 14.3 1.0

Iron binding site 5 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:77.0 occ:1.00 FE1 E:FES301 0.0 77.0 1.0 SG E:CYS103 2.2 76.2 1.0 SG E:CYS108 2.2 77.1 1.0 S2 E:FES301 2.2 77.6 1.0 S1 E:FES301 2.2 77.3 1.0 FE2 E:FES301 2.9 77.8 1.0 CB E:CYS103 3.5 75.6 1.0 CB E:CYS108 3.5 76.7 1.0 SG E:CYS144 4.4 77.7 1.0 N E:CYS108 4.5 76.0 1.0 CA E:CYS108 4.6 76.6 1.0 SG E:CYS148 4.6 77.4 1.0 CA E:CYS144 4.7 78.1 1.0 CB E:THR105 4.7 74.0 1.0 CB E:CYS144 4.8 77.8 1.0 CB E:MET153 4.8 72.2 1.0 CA E:CYS103 4.8 75.3 1.0 N E:LEU145 4.8 77.5 1.0 O E:THR105 5.0 74.7 1.0

Iron binding site 6 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 6 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ E:Fe301 b:77.8 occ:1.00 FE2 E:FES301 0.0 77.8 1.0 S2 E:FES301 2.2 77.6 1.0 S1 E:FES301 2.2 77.3 1.0 SG E:CYS148 2.2 77.4 1.0 SG E:CYS144 2.2 77.7 1.0 FE1 E:FES301 2.9 77.0 1.0 CB E:CYS148 3.6 76.9 1.0 CB E:CYS144 3.6 77.8 1.0 CA E:CYS148 4.1 76.4 1.0 N E:GLY146 4.2 76.9 1.0 CA E:CYS144 4.2 78.1 1.0 O E:GLY146 4.3 76.8 1.0 N E:CYS148 4.3 76.5 1.0 SG E:CYS103 4.4 76.2 1.0 N E:LEU145 4.4 77.5 1.0 CB F:PRO102 4.4 76.8 1.0 CA F:PRO102 4.4 77.0 1.0 C E:GLY146 4.4 76.7 1.0 N F:GLY103 4.6 77.4 1.0 C E:ALA147 4.6 76.6 1.0 SG E:CYS108 4.6 77.1 1.0 CA E:GLY146 4.6 76.8 1.0 C E:CYS144 4.6 77.8 1.0 O E:ALA147 4.7 76.6 1.0 C F:PRO102 5.0 77.3 1.0 N E:ALA147 5.0 76.6 1.0

Iron binding site 7 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 7 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:42.2 occ:1.00 FE1 F:SF4502 0.0 42.2 1.0 S4 F:SF4502 2.3 42.2 1.0 S2 F:SF4502 2.3 42.4 1.0 S3 F:SF4502 2.3 42.1 1.0 SG F:CYS362 2.3 42.5 1.0 FE2 F:SF4502 2.7 41.8 1.0 FE3 F:SF4502 2.7 42.3 1.0 FE4 F:SF4502 2.7 42.1 1.0 CB F:CYS362 3.2 42.0 1.0 N F:CYS362 3.6 41.6 1.0 S1 F:SF4502 3.9 42.2 1.0 CA F:CYS362 4.0 41.6 1.0 N F:ILE404 4.3 44.5 1.0 CB F:ILE404 4.4 44.2 1.0 N F:CYS405 4.4 44.1 1.0 CB F:GLN361 4.4 41.5 1.0 CB F:CYS365 4.5 41.8 1.0 SG F:CYS365 4.7 41.9 1.0 C F:GLN361 4.7 41.6 1.0 SG F:CYS359 4.8 42.7 1.0 CB F:THR403 4.8 45.1 1.0 CD1 F:ILE404 4.8 44.2 1.0 SG F:CYS405 4.8 43.1 1.0 N F:GLN361 4.8 41.9 1.0 CA F:ILE404 4.8 44.3 1.0 O F:CYS362 4.8 41.8 1.0 CG1 F:ILE404 4.9 44.1 1.0 CG2 F:THR403 4.9 45.1 1.0 CA F:GLN361 4.9 41.7 1.0 C F:CYS362 5.0 41.6 1.0

Iron binding site 8 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 8 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:41.8 occ:1.00 FE2 F:SF4502 0.0 41.8 1.0 S3 F:SF4502 2.3 42.1 1.0 S4 F:SF4502 2.3 42.2 1.0 SG F:CYS365 2.3 41.9 1.0 S1 F:SF4502 2.3 42.2 1.0 FE1 F:SF4502 2.7 42.2 1.0 FE4 F:SF4502 2.7 42.1 1.0 FE3 F:SF4502 2.7 42.3 1.0 CB F:CYS365 3.1 41.8 1.0 S2 F:SF4502 3.9 42.4 1.0 CD2 F:LEU407 4.3 48.9 1.0 CA F:CYS365 4.5 41.8 1.0 N F:CYS359 4.6 43.8 1.0 CB F:SER358 4.6 45.6 1.0 CB F:LEU407 4.7 48.9 1.0 SG F:CYS362 4.7 42.5 1.0 SG F:CYS405 4.8 43.1 1.0 SG F:CYS359 4.8 42.7 1.0 N F:GLY408 4.9 51.7 1.0 CB F:CYS362 4.9 42.0 1.0 CA F:SER358 4.9 45.5 1.0 C F:CYS365 4.9 42.0 1.0 N F:GLY360 5.0 42.6 1.0

Iron binding site 9 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 9 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:42.3 occ:1.00 FE3 F:SF4502 0.0 42.3 1.0 S2 F:SF4502 2.3 42.4 1.0 S4 F:SF4502 2.3 42.2 1.0 SG F:CYS405 2.3 43.1 1.0 S1 F:SF4502 2.3 42.2 1.0 FE1 F:SF4502 2.7 42.2 1.0 FE4 F:SF4502 2.7 42.1 1.0 FE2 F:SF4502 2.7 41.8 1.0 CB F:CYS405 3.3 43.7 1.0 S3 F:SF4502 3.9 42.1 1.0 N F:CYS405 4.0 44.1 1.0 CB F:LEU407 4.0 48.9 1.0 CA F:CYS405 4.0 44.3 1.0 C F:CYS405 4.3 44.9 1.0 O F:CYS405 4.5 45.0 1.0 N F:LEU407 4.6 48.1 1.0 CG F:PRO203 4.6 47.5 1.0 N F:GLY408 4.8 51.7 1.0 CA F:LEU407 4.8 49.2 1.0 SG F:CYS359 4.8 42.7 1.0 SG F:CYS362 4.8 42.5 1.0 SG F:CYS365 4.8 41.9 1.0 CG F:LEU407 5.0 48.8 1.0

Iron binding site 10 out of 28 in the Mitochondrial Complex I in the Deactive State


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 10 of Mitochondrial Complex I in the Deactive State within 5.0Å range: probe atom residue distance (Å) B Occ F:Fe502 b:42.1 occ:1.00 FE4 F:SF4502 0.0 42.1 1.0 S3 F:SF4502 2.3 42.1 1.0 S1 F:SF4502 2.3 42.2 1.0 SG F:CYS359 2.3 42.7 1.0 S2 F:SF4502 2.3 42.4 1.0 FE3 F:SF4502 2.7 42.3 1.0 FE2 F:SF4502 2.7 41.8 1.0 FE1 F:SF4502 2.7 42.2 1.0 CB F:CYS359 3.3 42.9 1.0 N F:GLY360 3.8 42.6 1.0 N F:CYS359 3.8 43.8 1.0 S4 F:SF4502 3.9 42.2 1.0 N F:GLN361 4.0 41.9 1.0 CA F:CYS359 4.0 43.2 1.0 CB F:GLN361 4.2 41.5 1.0 C F:CYS359 4.4 43.0 1.0 CD F:PRO203 4.4 47.5 1.0 OE1 F:GLN361 4.6 41.9 1.0 CA F:GLN361 4.6 41.7 1.0 N F:CYS362 4.7 41.6 1.0 SG F:CYS405 4.8 43.1 1.0 SG F:CYS362 4.8 42.5 1.0 CG F:GLN361 4.8 41.6 1.0 CA F:GLY360 4.8 42.4 1.0 SG F:CYS365 4.8 41.9 1.0 C F:GLY360 4.9 42.2 1.0 CG F:PRO203 4.9 47.5 1.0 C F:SER358 5.0 44.8 1.0

J.N.Blaza, K.R.Vinothkumar, J.Hirst. Structure of the Deactive State of Mammalian Respiratory Complex I. Structure V. 26 312 2018.
ISSN: ISSN 1878-4186
PubMed: 29395787
DOI: 10.1016/J.STR.2017.12.014