Atomistry » Iron » PDB 5o10-5ojc » 5o64
Atomistry »
  Iron »
    PDB 5o10-5ojc »
      5o64 »

Iron in PDB 5o64: From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography

Protein crystallography data

The structure of From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography, PDB code: 5o64 was solved by R.Dods, P.Baath, G.Branden, R.Neutze, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.39 / 3.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 226.600, 226.600, 113.800, 90.00, 90.00, 90.00
R / Rfree (%) 15.4 / 19.6

Other elements in 5o64:

The structure of From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Iron Binding Sites:

The binding sites of Iron atom in the From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography (pdb code 5o64). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 5 binding sites of Iron where determined in the From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography, PDB code: 5o64:
Jump to Iron binding site number: 1; 2; 3; 4; 5;

Iron binding site 1 out of 5 in 5o64

Go back to Iron Binding Sites List in 5o64
Iron binding site 1 out of 5 in the From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe401

b:0.5
occ:1.00
FE C:HEC401 0.0 0.5 1.0
NE2 C:HIS91 2.0 0.5 1.0
NB C:HEC401 2.0 0.3 1.0
NA C:HEC401 2.1 0.6 1.0
NC C:HEC401 2.1 0.2 1.0
ND C:HEC401 2.1 0.7 1.0
SD C:MET74 2.4 0.1 1.0
CD2 C:HIS91 3.0 0.3 1.0
CE1 C:HIS91 3.0 0.3 1.0
C4A C:HEC401 3.0 0.1 1.0
C1B C:HEC401 3.1 0.7 1.0
C1C C:HEC401 3.1 0.4 1.0
C4B C:HEC401 3.1 0.4 1.0
C1D C:HEC401 3.1 0.5 1.0
C1A C:HEC401 3.1 0.2 1.0
C4C C:HEC401 3.1 0.8 1.0
C4D C:HEC401 3.1 0.8 1.0
CHB C:HEC401 3.4 0.5 1.0
CHC C:HEC401 3.4 0.4 1.0
CHD C:HEC401 3.4 0.0 1.0
CHA C:HEC401 3.5 0.7 1.0
CE C:MET74 3.6 0.1 1.0
CG C:MET74 3.7 1.0 1.0
ND1 C:HIS91 4.1 0.9 1.0
CG C:HIS91 4.1 0.9 1.0
C3A C:HEC401 4.3 0.8 1.0
C3B C:HEC401 4.3 99.0 1.0
C2A C:HEC401 4.3 0.3 1.0
C2B C:HEC401 4.3 0.1 1.0
C2C C:HEC401 4.3 0.6 1.0
C2D C:HEC401 4.3 0.8 1.0
C3D C:HEC401 4.3 0.6 1.0
C3C C:HEC401 4.3 0.8 1.0
CB C:MET74 4.4 0.3 1.0

Iron binding site 2 out of 5 in 5o64

Go back to Iron Binding Sites List in 5o64
Iron binding site 2 out of 5 in the From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe402

b:0.1
occ:1.00
FE C:HEC402 0.0 0.1 1.0
NB C:HEC402 2.0 0.5 1.0
NC C:HEC402 2.1 0.1 1.0
NA C:HEC402 2.1 0.5 1.0
ND C:HEC402 2.1 1.0 1.0
NE2 C:HIS136 2.1 0.0 1.0
SD C:MET110 2.3 99.8 1.0
CE1 C:HIS136 3.0 0.1 1.0
C4B C:HEC402 3.0 98.7 1.0
C1B C:HEC402 3.0 95.5 1.0
C1C C:HEC402 3.0 0.1 1.0
C4A C:HEC402 3.1 100.0 1.0
C1A C:HEC402 3.1 0.7 1.0
C1D C:HEC402 3.1 1.0 1.0
C4C C:HEC402 3.1 0.9 1.0
C4D C:HEC402 3.1 1.0 1.0
CD2 C:HIS136 3.2 98.5 1.0
CG C:MET110 3.3 0.0 1.0
CHC C:HEC402 3.4 0.2 1.0
CHB C:HEC402 3.4 93.4 1.0
CHA C:HEC402 3.5 0.5 1.0
CHD C:HEC402 3.5 0.7 1.0
CE C:MET110 3.5 0.1 1.0
CB C:MET110 4.1 0.1 1.0
ND1 C:HIS136 4.1 95.2 1.0
C2B C:HEC402 4.2 91.5 1.0
C3B C:HEC402 4.2 97.1 1.0
CG C:HIS136 4.3 100.0 1.0
C3A C:HEC402 4.3 0.5 1.0
C2A C:HEC402 4.3 0.5 1.0
C2C C:HEC402 4.3 0.9 1.0
C2D C:HEC402 4.3 0.1 1.0
C3C C:HEC402 4.3 0.3 1.0
C3D C:HEC402 4.3 0.8 1.0

Iron binding site 3 out of 5 in 5o64

Go back to Iron Binding Sites List in 5o64
Iron binding site 3 out of 5 in the From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 3 of From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe403

b:93.8
occ:1.00
FE C:HEC403 0.0 93.8 1.0
NB C:HEC403 2.0 90.5 1.0
NA C:HEC403 2.1 92.1 1.0
NC C:HEC403 2.1 95.4 1.0
ND C:HEC403 2.1 87.6 1.0
NE2 C:HIS248 2.1 94.2 1.0
SD C:MET233 2.3 99.5 1.0
CE1 C:HIS248 2.8 0.5 1.0
C4B C:HEC403 3.0 90.0 1.0
C4A C:HEC403 3.0 91.2 1.0
C1B C:HEC403 3.0 89.5 1.0
C1C C:HEC403 3.1 90.1 1.0
C1D C:HEC403 3.1 93.5 1.0
C1A C:HEC403 3.1 94.9 1.0
C4C C:HEC403 3.1 96.6 1.0
C4D C:HEC403 3.1 86.0 1.0
CD2 C:HIS248 3.3 90.2 1.0
CHC C:HEC403 3.4 88.5 1.0
CHB C:HEC403 3.4 90.6 1.0
CG C:MET233 3.4 98.6 1.0
CHD C:HEC403 3.5 96.1 1.0
CHA C:HEC403 3.5 91.4 1.0
CE C:MET233 3.5 95.4 1.0
ND1 C:HIS248 4.1 0.3 1.0
CB C:MET233 4.3 95.1 1.0
C3B C:HEC403 4.3 87.2 1.0
C3A C:HEC403 4.3 92.1 1.0
C2B C:HEC403 4.3 89.0 1.0
C2C C:HEC403 4.3 92.0 1.0
C2A C:HEC403 4.3 94.5 1.0
C2D C:HEC403 4.3 93.5 1.0
C3C C:HEC403 4.3 96.3 1.0
CG C:HIS248 4.3 96.4 1.0
C3D C:HEC403 4.3 89.4 1.0

Iron binding site 4 out of 5 in 5o64

Go back to Iron Binding Sites List in 5o64
Iron binding site 4 out of 5 in the From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 4 of From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Fe404

b:97.0
occ:1.00
FE C:HEC404 0.0 97.0 1.0
NB C:HEC404 2.0 91.1 1.0
NC C:HEC404 2.0 97.2 1.0
NA C:HEC404 2.1 91.9 1.0
ND C:HEC404 2.1 97.9 1.0
NE2 C:HIS309 2.1 89.5 1.0
NE2 C:HIS124 2.2 1.0 1.0
C4B C:HEC404 3.0 93.3 1.0
CE1 C:HIS124 3.0 0.8 1.0
C1C C:HEC404 3.0 99.2 1.0
C1B C:HEC404 3.0 91.7 1.0
C4A C:HEC404 3.1 0.9 1.0
C1D C:HEC404 3.1 0.8 1.0
C4C C:HEC404 3.1 0.5 1.0
C1A C:HEC404 3.1 89.6 1.0
CE1 C:HIS309 3.1 87.1 1.0
C4D C:HEC404 3.1 1.0 1.0
CD2 C:HIS309 3.2 91.1 1.0
CD2 C:HIS124 3.3 0.8 1.0
CHC C:HEC404 3.3 0.3 1.0
CHB C:HEC404 3.4 0.7 1.0
CHD C:HEC404 3.4 0.1 1.0
CHA C:HEC404 3.4 0.0 1.0
ND1 C:HIS124 4.1 0.2 1.0
ND1 C:HIS309 4.2 91.3 1.0
C3B C:HEC404 4.3 92.7 1.0
C2B C:HEC404 4.3 89.5 1.0
C2C C:HEC404 4.3 96.5 1.0
CG C:HIS124 4.3 95.8 1.0
C3A C:HEC404 4.3 98.2 1.0
CG C:HIS309 4.3 93.6 1.0
C2D C:HEC404 4.3 0.2 1.0
C3C C:HEC404 4.3 0.4 1.0
C2A C:HEC404 4.3 94.0 1.0
C3D C:HEC404 4.4 0.2 1.0
CG C:PRO315 5.0 0.1 1.0

Iron binding site 5 out of 5 in 5o64

Go back to Iron Binding Sites List in 5o64
Iron binding site 5 out of 5 in the From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 5 of From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Fe306

b:97.4
occ:1.00
NE2 L:HIS190 2.2 97.2 1.0
OE2 M:GLU232 2.2 94.8 1.0
NE2 M:HIS217 2.3 97.0 1.0
NE2 L:HIS230 2.4 0.8 1.0
NE2 M:HIS264 2.4 0.6 1.0
OE1 M:GLU232 2.5 0.9 1.0
CD M:GLU232 2.7 0.5 1.0
CE1 L:HIS190 3.1 0.9 1.0
CE1 M:HIS217 3.1 94.3 1.0
CD2 L:HIS190 3.2 0.5 1.0
CE1 M:HIS264 3.3 98.4 1.0
CE1 L:HIS230 3.3 0.8 1.0
CD2 M:HIS217 3.4 98.5 1.0
CD2 L:HIS230 3.4 0.5 1.0
CD2 M:HIS264 3.5 0.5 1.0
CG M:GLU232 4.2 1.0 1.0
ND1 L:HIS190 4.3 1.0 1.0
ND1 M:HIS217 4.3 99.4 1.0
CG L:HIS190 4.3 96.9 1.0
CG1 M:ILE221 4.4 94.1 1.0
ND1 M:HIS264 4.4 93.2 1.0
ND1 L:HIS230 4.4 99.7 1.0
CG M:HIS217 4.5 0.7 1.0
CG1 L:ILE194 4.5 0.2 1.0
CG L:HIS230 4.5 99.1 1.0
CG M:HIS264 4.6 96.9 1.0
CD1 M:ILE221 5.0 95.4 1.0

Reference:

R.Dods, P.Bath, D.Arnlund, K.R.Beyerlein, G.Nelson, M.Liang, R.Harimoorthy, P.Berntsen, E.Malmerberg, L.Johansson, R.Andersson, R.Bosman, S.Carbajo, E.Claesson, C.E.Conrad, P.Dahl, G.Hammarin, M.S.Hunter, C.Li, S.Lisova, D.Milathianaki, J.Robinson, C.Safari, A.Sharma, G.Williams, C.Wickstrand, O.Yefanov, J.Davidsson, D.P.Deponte, A.Barty, G.Branden, R.Neutze. From Macrocrystals to Microcrystals: A Strategy For Membrane Protein Serial Crystallography. Structure V. 25 1461 2017.
ISSN: ISSN 1878-4186
PubMed: 28781082
DOI: 10.1016/J.STR.2017.07.002
Page generated: Sun Dec 13 16:09:48 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy