Atomistry » Iron » PDB 5o10-5ojc » 5obo
Atomistry »
  Iron »
    PDB 5o10-5ojc »
      5obo »

Iron in PDB 5obo: Crystal Structure of Nitrite Bound D97N Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii

Protein crystallography data

The structure of Crystal Structure of Nitrite Bound D97N Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii, PDB code: 5obo was solved by J.Dong, D.Sasaki, R.Eady, S.V.Antonyuk, S.S.Hasnain, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 90.00 / 1.89
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 180.690, 180.690, 180.690, 90.00, 90.00, 90.00
R / Rfree (%) 14.7 / 17.5

Other elements in 5obo:

The structure of Crystal Structure of Nitrite Bound D97N Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Crystal Structure of Nitrite Bound D97N Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii (pdb code 5obo). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Crystal Structure of Nitrite Bound D97N Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii, PDB code: 5obo:

Iron binding site 1 out of 1 in 5obo

Go back to Iron Binding Sites List in 5obo
Iron binding site 1 out of 1 in the Crystal Structure of Nitrite Bound D97N Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Crystal Structure of Nitrite Bound D97N Mutant of Three-Domain Heme-Cu Nitrite Reductase From Ralstonia Pickettii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe503

b:26.7
occ:1.00
FE A:HEC503 0.0 26.7 1.0
NE2 A:HIS368 2.0 24.1 1.0
ND A:HEC503 2.0 30.6 1.0
NB A:HEC503 2.0 28.6 1.0
NC A:HEC503 2.1 28.4 1.0
NA A:HEC503 2.1 31.6 1.0
SD A:MET418 2.2 27.5 1.0
CE1 A:HIS368 2.9 26.1 1.0
C4B A:HEC503 3.0 29.6 1.0
C4D A:HEC503 3.0 31.1 1.0
C1D A:HEC503 3.0 31.0 1.0
C1C A:HEC503 3.1 27.3 1.0
C4C A:HEC503 3.1 28.0 1.0
C1B A:HEC503 3.1 30.6 1.0
C1A A:HEC503 3.1 31.4 1.0
C4A A:HEC503 3.1 33.1 1.0
CD2 A:HIS368 3.1 25.4 1.0
CHC A:HEC503 3.3 25.9 1.0
CG A:MET418 3.3 27.6 1.0
CHA A:HEC503 3.4 29.6 1.0
CHD A:HEC503 3.4 27.1 1.0
CHB A:HEC503 3.4 30.0 1.0
CE A:MET418 3.4 27.2 1.0
ND1 A:HIS368 4.0 24.1 1.0
CG A:HIS368 4.2 25.2 1.0
CB A:MET418 4.2 28.2 1.0
C3D A:HEC503 4.2 31.5 1.0
C2D A:HEC503 4.3 30.1 1.0
C3B A:HEC503 4.3 27.9 1.0
C2B A:HEC503 4.3 30.2 1.0
C3C A:HEC503 4.3 27.8 1.0
C2C A:HEC503 4.3 27.3 1.0
C3A A:HEC503 4.3 34.0 1.0
C2A A:HEC503 4.3 34.4 1.0

Reference:

J.Dong, D.Sasaki, R.Eady, S.V.Antonyuk, S.S.Hasnain. Activation of Redox Tyrosine Switch Is Required For Ligand Binding at the Catalytic Site in Heme-Cu Nitrite Reductases To Be Published.
Page generated: Sun Dec 13 16:09:53 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy