Iron in PDB 5ohf: Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
Enzymatic activity of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
All present enzymatic activity of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced:
2.7.13.3;
Protein crystallography data
The structure of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced, PDB code: 5ohf
was solved by
T.Skalova,
P.Kolenko,
J.Dohnalek,
M.Stranava,
M.Martinkova,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
49.17 /
1.80
|
|
Space group
|
P 41 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.685,
77.685,
441.238,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
19 /
23.9
|
Other elements in 5ohf:
The structure of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced also contains other interesting chemical elements:
Iron Binding Sites:
The binding sites of Iron atom in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
(pdb code 5ohf). This binding sites where shown within
5.0 Angstroms radius around Iron atom.
In total 9 binding sites of Iron where determined in the
Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced, PDB code: 5ohf:
Jump to Iron binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
Iron binding site 1 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 1 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 1 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Fe200
b:19.9
occ:1.00
|
FE
|
A:HEM200
|
0.0
|
19.9
|
1.0
|
|
ND
|
A:HEM200
|
1.9
|
21.4
|
1.0
|
|
NA
|
A:HEM200
|
2.0
|
20.4
|
1.0
|
|
C
|
A:CYN201
|
2.0
|
16.8
|
1.0
|
|
NC
|
A:HEM200
|
2.1
|
20.5
|
1.0
|
|
NB
|
A:HEM200
|
2.1
|
19.7
|
1.0
|
|
NE2
|
A:HIS99
|
2.1
|
21.3
|
1.0
|
|
C4D
|
A:HEM200
|
2.9
|
23.4
|
1.0
|
|
C1D
|
A:HEM200
|
2.9
|
21.3
|
1.0
|
|
C1A
|
A:HEM200
|
3.0
|
21.9
|
1.0
|
|
C4A
|
A:HEM200
|
3.0
|
20.8
|
1.0
|
|
C4B
|
A:HEM200
|
3.0
|
19.1
|
1.0
|
|
C4C
|
A:HEM200
|
3.1
|
21.0
|
1.0
|
|
C1C
|
A:HEM200
|
3.1
|
20.5
|
1.0
|
|
C1B
|
A:HEM200
|
3.1
|
20.1
|
1.0
|
|
CE1
|
A:HIS99
|
3.1
|
23.6
|
1.0
|
|
CD2
|
A:HIS99
|
3.2
|
21.4
|
1.0
|
|
N
|
A:CYN201
|
3.3
|
20.7
|
1.0
|
|
CHA
|
A:HEM200
|
3.4
|
22.2
|
1.0
|
|
CHD
|
A:HEM200
|
3.4
|
21.8
|
1.0
|
|
CHC
|
A:HEM200
|
3.4
|
20.1
|
1.0
|
|
CHB
|
A:HEM200
|
3.4
|
20.2
|
1.0
|
|
C2A
|
A:HEM200
|
4.2
|
23.9
|
1.0
|
|
C3A
|
A:HEM200
|
4.2
|
21.4
|
1.0
|
|
C3D
|
A:HEM200
|
4.2
|
25.2
|
1.0
|
|
C2D
|
A:HEM200
|
4.2
|
23.5
|
1.0
|
|
ND1
|
A:HIS99
|
4.2
|
22.1
|
1.0
|
|
C2C
|
A:HEM200
|
4.3
|
20.5
|
1.0
|
|
C3C
|
A:HEM200
|
4.3
|
21.1
|
1.0
|
|
CG
|
A:HIS99
|
4.3
|
22.0
|
1.0
|
|
C2B
|
A:HEM200
|
4.3
|
20.0
|
1.0
|
|
C3B
|
A:HEM200
|
4.3
|
20.0
|
1.0
|
|
O
|
A:HOH323
|
5.0
|
22.8
|
1.0
|
|
Iron binding site 2 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 2 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 2 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Fe200
b:19.3
occ:1.00
|
FE
|
B:HEM200
|
0.0
|
19.3
|
1.0
|
|
ND
|
B:HEM200
|
1.9
|
20.3
|
1.0
|
|
NA
|
B:HEM200
|
2.0
|
19.8
|
1.0
|
|
NC
|
B:HEM200
|
2.0
|
18.6
|
1.0
|
|
NE2
|
B:HIS99
|
2.1
|
18.8
|
1.0
|
|
NB
|
B:HEM200
|
2.1
|
18.4
|
1.0
|
|
C
|
B:CYN201
|
2.2
|
17.9
|
1.0
|
|
C4D
|
B:HEM200
|
2.9
|
22.3
|
1.0
|
|
C1D
|
B:HEM200
|
2.9
|
21.4
|
1.0
|
|
CE1
|
B:HIS99
|
3.0
|
20.5
|
1.0
|
|
C1A
|
B:HEM200
|
3.0
|
21.2
|
1.0
|
|
C4B
|
B:HEM200
|
3.0
|
18.2
|
1.0
|
|
C4C
|
B:HEM200
|
3.0
|
20.1
|
1.0
|
|
C1B
|
B:HEM200
|
3.1
|
18.4
|
1.0
|
|
C4A
|
B:HEM200
|
3.1
|
19.6
|
1.0
|
|
C1C
|
B:HEM200
|
3.1
|
18.4
|
1.0
|
|
CD2
|
B:HIS99
|
3.1
|
20.4
|
1.0
|
|
N
|
B:CYN201
|
3.3
|
22.3
|
1.0
|
|
CHD
|
B:HEM200
|
3.4
|
20.2
|
1.0
|
|
CHA
|
B:HEM200
|
3.4
|
22.3
|
1.0
|
|
CHC
|
B:HEM200
|
3.4
|
18.6
|
1.0
|
|
CHB
|
B:HEM200
|
3.4
|
18.9
|
1.0
|
|
ND1
|
B:HIS99
|
4.1
|
19.0
|
1.0
|
|
C2D
|
B:HEM200
|
4.2
|
22.4
|
1.0
|
|
C3D
|
B:HEM200
|
4.2
|
23.8
|
1.0
|
|
CG
|
B:HIS99
|
4.2
|
19.6
|
1.0
|
|
C2A
|
B:HEM200
|
4.2
|
22.6
|
1.0
|
|
C3C
|
B:HEM200
|
4.3
|
19.4
|
1.0
|
|
C3A
|
B:HEM200
|
4.3
|
20.2
|
1.0
|
|
C2C
|
B:HEM200
|
4.3
|
18.9
|
1.0
|
|
C2B
|
B:HEM200
|
4.3
|
18.5
|
1.0
|
|
C3B
|
B:HEM200
|
4.3
|
18.7
|
1.0
|
|
O
|
B:HOH318
|
4.9
|
24.1
|
1.0
|
|
Iron binding site 3 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 3 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 3 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Fe200
b:27.0
occ:1.00
|
FE
|
C:HEM200
|
0.0
|
27.0
|
1.0
|
|
ND
|
C:HEM200
|
1.9
|
28.3
|
1.0
|
|
NA
|
C:HEM200
|
2.0
|
27.8
|
1.0
|
|
NC
|
C:HEM200
|
2.1
|
28.5
|
1.0
|
|
NB
|
C:HEM200
|
2.1
|
27.2
|
1.0
|
|
NE2
|
C:HIS99
|
2.1
|
23.6
|
1.0
|
|
C
|
C:CYN201
|
2.2
|
22.9
|
1.0
|
|
C4D
|
C:HEM200
|
2.9
|
29.9
|
1.0
|
|
C1D
|
C:HEM200
|
2.9
|
28.3
|
1.0
|
|
C1A
|
C:HEM200
|
3.0
|
30.3
|
1.0
|
|
C4A
|
C:HEM200
|
3.0
|
28.1
|
1.0
|
|
C4B
|
C:HEM200
|
3.0
|
27.9
|
1.0
|
|
C1B
|
C:HEM200
|
3.0
|
27.1
|
1.0
|
|
C4C
|
C:HEM200
|
3.1
|
29.6
|
1.0
|
|
CE1
|
C:HIS99
|
3.1
|
25.0
|
1.0
|
|
C1C
|
C:HEM200
|
3.1
|
29.2
|
1.0
|
|
CD2
|
C:HIS99
|
3.1
|
25.1
|
1.0
|
|
CHA
|
C:HEM200
|
3.4
|
30.9
|
1.0
|
|
CHD
|
C:HEM200
|
3.4
|
29.0
|
1.0
|
|
CHB
|
C:HEM200
|
3.4
|
27.0
|
1.0
|
|
N
|
C:CYN201
|
3.4
|
28.4
|
1.0
|
|
CHC
|
C:HEM200
|
3.4
|
27.6
|
1.0
|
|
ND1
|
C:HIS99
|
4.2
|
25.7
|
1.0
|
|
C2D
|
C:HEM200
|
4.2
|
30.4
|
1.0
|
|
C2A
|
C:HEM200
|
4.2
|
30.0
|
1.0
|
|
C3D
|
C:HEM200
|
4.2
|
32.9
|
1.0
|
|
C3A
|
C:HEM200
|
4.2
|
28.4
|
1.0
|
|
CG
|
C:HIS99
|
4.2
|
25.0
|
1.0
|
|
C3C
|
C:HEM200
|
4.3
|
29.8
|
1.0
|
|
C2B
|
C:HEM200
|
4.3
|
26.3
|
1.0
|
|
C2C
|
C:HEM200
|
4.3
|
29.1
|
1.0
|
|
C3B
|
C:HEM200
|
4.3
|
26.8
|
1.0
|
|
O
|
C:HOH312
|
4.9
|
28.8
|
1.0
|
|
Iron binding site 4 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 4 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 4 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Fe200
b:23.5
occ:1.00
|
FE
|
D:HEM200
|
0.0
|
23.5
|
1.0
|
|
ND
|
D:HEM200
|
1.9
|
23.7
|
1.0
|
|
NA
|
D:HEM200
|
2.0
|
24.4
|
1.0
|
|
NC
|
D:HEM200
|
2.1
|
22.5
|
1.0
|
|
NB
|
D:HEM200
|
2.1
|
23.1
|
1.0
|
|
NE2
|
D:HIS99
|
2.2
|
27.1
|
1.0
|
|
C
|
D:CYN201
|
2.3
|
22.2
|
1.0
|
|
C4D
|
D:HEM200
|
2.9
|
24.6
|
1.0
|
|
C1D
|
D:HEM200
|
2.9
|
23.6
|
1.0
|
|
C1A
|
D:HEM200
|
3.0
|
25.8
|
1.0
|
|
C4B
|
D:HEM200
|
3.0
|
23.1
|
1.0
|
|
C4A
|
D:HEM200
|
3.0
|
24.3
|
1.0
|
|
C4C
|
D:HEM200
|
3.1
|
22.7
|
1.0
|
|
C1B
|
D:HEM200
|
3.1
|
22.9
|
1.0
|
|
C1C
|
D:HEM200
|
3.1
|
22.5
|
1.0
|
|
CE1
|
D:HIS99
|
3.1
|
26.8
|
1.0
|
|
N
|
D:CYN201
|
3.1
|
25.3
|
1.0
|
|
CD2
|
D:HIS99
|
3.2
|
28.0
|
1.0
|
|
CHA
|
D:HEM200
|
3.3
|
24.9
|
1.0
|
|
CHD
|
D:HEM200
|
3.4
|
23.4
|
1.0
|
|
CHC
|
D:HEM200
|
3.4
|
22.6
|
1.0
|
|
CHB
|
D:HEM200
|
3.4
|
23.7
|
1.0
|
|
C3D
|
D:HEM200
|
4.2
|
24.9
|
1.0
|
|
C2D
|
D:HEM200
|
4.2
|
24.3
|
1.0
|
|
C2A
|
D:HEM200
|
4.2
|
27.6
|
1.0
|
|
C3A
|
D:HEM200
|
4.2
|
25.4
|
1.0
|
|
ND1
|
D:HIS99
|
4.2
|
27.0
|
1.0
|
|
C3C
|
D:HEM200
|
4.3
|
22.4
|
1.0
|
|
C2C
|
D:HEM200
|
4.3
|
22.3
|
1.0
|
|
C2B
|
D:HEM200
|
4.3
|
22.6
|
1.0
|
|
C3B
|
D:HEM200
|
4.3
|
22.9
|
1.0
|
|
CG
|
D:HIS99
|
4.3
|
27.5
|
1.0
|
|
Iron binding site 5 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 5 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 5 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Fe201
b:19.6
occ:1.00
|
FE
|
E:HEM201
|
0.0
|
19.6
|
1.0
|
|
C
|
E:CYN202
|
1.9
|
16.2
|
1.0
|
|
ND
|
E:HEM201
|
1.9
|
20.6
|
1.0
|
|
NA
|
E:HEM201
|
2.0
|
20.0
|
1.0
|
|
NC
|
E:HEM201
|
2.1
|
20.7
|
1.0
|
|
NB
|
E:HEM201
|
2.1
|
19.3
|
1.0
|
|
NE2
|
E:HIS99
|
2.1
|
18.8
|
1.0
|
|
C4D
|
E:HEM201
|
2.9
|
21.5
|
1.0
|
|
C1D
|
E:HEM201
|
2.9
|
21.3
|
1.0
|
|
C1A
|
E:HEM201
|
3.0
|
21.9
|
1.0
|
|
C4A
|
E:HEM201
|
3.0
|
20.9
|
1.0
|
|
C4B
|
E:HEM201
|
3.0
|
19.9
|
1.0
|
|
C4C
|
E:HEM201
|
3.0
|
21.7
|
1.0
|
|
C1C
|
E:HEM201
|
3.1
|
20.8
|
1.0
|
|
C1B
|
E:HEM201
|
3.1
|
20.1
|
1.0
|
|
CE1
|
E:HIS99
|
3.1
|
18.9
|
1.0
|
|
CD2
|
E:HIS99
|
3.1
|
18.2
|
1.0
|
|
N
|
E:CYN202
|
3.2
|
18.6
|
1.0
|
|
CHA
|
E:HEM201
|
3.4
|
21.4
|
1.0
|
|
CHD
|
E:HEM201
|
3.4
|
21.8
|
1.0
|
|
CHC
|
E:HEM201
|
3.4
|
20.1
|
1.0
|
|
CHB
|
E:HEM201
|
3.4
|
20.3
|
1.0
|
|
C2A
|
E:HEM201
|
4.2
|
23.4
|
1.0
|
|
C3A
|
E:HEM201
|
4.2
|
22.0
|
1.0
|
|
ND1
|
E:HIS99
|
4.2
|
18.4
|
1.0
|
|
C2D
|
E:HEM201
|
4.2
|
22.6
|
1.0
|
|
C3D
|
E:HEM201
|
4.2
|
23.7
|
1.0
|
|
C3C
|
E:HEM201
|
4.3
|
22.6
|
1.0
|
|
C2C
|
E:HEM201
|
4.3
|
20.9
|
1.0
|
|
CG
|
E:HIS99
|
4.3
|
19.4
|
1.0
|
|
C2B
|
E:HEM201
|
4.3
|
19.1
|
1.0
|
|
C3B
|
E:HEM201
|
4.3
|
20.0
|
1.0
|
|
Iron binding site 6 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 6 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 6 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Fe200
b:20.9
occ:1.00
|
FE
|
F:HEM200
|
0.0
|
20.9
|
1.0
|
|
ND
|
F:HEM200
|
1.9
|
22.7
|
1.0
|
|
NA
|
F:HEM200
|
2.0
|
21.7
|
1.0
|
|
NC
|
F:HEM200
|
2.1
|
21.5
|
1.0
|
|
NB
|
F:HEM200
|
2.1
|
20.3
|
1.0
|
|
NE2
|
F:HIS99
|
2.1
|
20.3
|
1.0
|
|
C
|
F:CYN201
|
2.3
|
22.6
|
1.0
|
|
C4D
|
F:HEM200
|
2.9
|
25.0
|
1.0
|
|
C1D
|
F:HEM200
|
2.9
|
23.0
|
1.0
|
|
C1A
|
F:HEM200
|
3.0
|
24.1
|
1.0
|
|
C4B
|
F:HEM200
|
3.0
|
19.6
|
1.0
|
|
C4A
|
F:HEM200
|
3.0
|
22.2
|
1.0
|
|
C4C
|
F:HEM200
|
3.1
|
21.6
|
1.0
|
|
C1B
|
F:HEM200
|
3.1
|
20.6
|
1.0
|
|
C1C
|
F:HEM200
|
3.1
|
20.7
|
1.0
|
|
CD2
|
F:HIS99
|
3.1
|
21.0
|
1.0
|
|
CE1
|
F:HIS99
|
3.1
|
21.5
|
1.0
|
|
N
|
F:CYN201
|
3.2
|
27.4
|
1.0
|
|
CHA
|
F:HEM200
|
3.4
|
24.3
|
1.0
|
|
CHC
|
F:HEM200
|
3.4
|
21.0
|
1.0
|
|
CHD
|
F:HEM200
|
3.4
|
22.3
|
1.0
|
|
CHB
|
F:HEM200
|
3.4
|
20.4
|
1.0
|
|
C3D
|
F:HEM200
|
4.2
|
26.2
|
1.0
|
|
C2D
|
F:HEM200
|
4.2
|
25.8
|
1.0
|
|
C2A
|
F:HEM200
|
4.2
|
24.9
|
1.0
|
|
C3A
|
F:HEM200
|
4.2
|
22.9
|
1.0
|
|
ND1
|
F:HIS99
|
4.2
|
21.1
|
1.0
|
|
C3C
|
F:HEM200
|
4.3
|
21.2
|
1.0
|
|
C2C
|
F:HEM200
|
4.3
|
21.0
|
1.0
|
|
CG
|
F:HIS99
|
4.3
|
21.6
|
1.0
|
|
C2B
|
F:HEM200
|
4.3
|
20.1
|
1.0
|
|
C3B
|
F:HEM200
|
4.3
|
20.9
|
1.0
|
|
Iron binding site 7 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 7 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 7 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe200
b:20.3
occ:0.50
|
FE
|
G:HEM200
|
0.0
|
20.3
|
0.5
|
|
CE1
|
G:HIS99
|
1.1
|
25.1
|
0.5
|
|
NE2
|
G:HIS99
|
1.5
|
23.7
|
0.5
|
|
ND
|
G:HEM200
|
1.9
|
21.2
|
0.5
|
|
NE2
|
G:HIS99
|
2.0
|
20.3
|
0.5
|
|
NA
|
G:HEM200
|
2.0
|
20.9
|
0.5
|
|
NC
|
G:HEM200
|
2.1
|
20.2
|
0.5
|
|
NB
|
G:HEM200
|
2.1
|
19.8
|
0.5
|
|
C
|
G:CYN201
|
2.1
|
21.6
|
0.5
|
|
NA
|
G:HEM200
|
2.1
|
29.5
|
0.5
|
|
ND1
|
G:HIS99
|
2.3
|
25.2
|
0.5
|
|
FE
|
G:HEM200
|
2.5
|
28.6
|
0.5
|
|
C1A
|
G:HEM200
|
2.5
|
30.9
|
0.5
|
|
CD2
|
G:HIS99
|
2.7
|
25.4
|
0.5
|
|
C4A
|
G:HEM200
|
2.8
|
29.7
|
0.5
|
|
CE1
|
G:HIS99
|
2.8
|
20.3
|
0.5
|
|
C4D
|
G:HEM200
|
2.9
|
22.2
|
0.5
|
|
C1D
|
G:HEM200
|
2.9
|
21.3
|
0.5
|
|
C1A
|
G:HEM200
|
3.0
|
21.8
|
0.5
|
|
C4B
|
G:HEM200
|
3.0
|
19.7
|
0.5
|
|
C4A
|
G:HEM200
|
3.0
|
20.8
|
0.5
|
|
C4C
|
G:HEM200
|
3.1
|
20.9
|
0.5
|
|
CG
|
G:HIS99
|
3.1
|
25.8
|
0.5
|
|
CD2
|
G:HIS99
|
3.1
|
20.0
|
0.5
|
|
C1B
|
G:HEM200
|
3.1
|
20.1
|
0.5
|
|
C1C
|
G:HEM200
|
3.1
|
20.0
|
0.5
|
|
CHA
|
G:HEM200
|
3.1
|
30.4
|
0.5
|
|
ND
|
G:HEM200
|
3.2
|
30.1
|
0.5
|
|
NB
|
G:HEM200
|
3.3
|
28.7
|
0.5
|
|
C4D
|
G:HEM200
|
3.4
|
30.1
|
0.5
|
|
CHA
|
G:HEM200
|
3.4
|
22.1
|
0.5
|
|
C2A
|
G:HEM200
|
3.4
|
32.0
|
0.5
|
|
CHD
|
G:HEM200
|
3.4
|
21.4
|
0.5
|
|
N
|
G:CYN201
|
3.4
|
25.8
|
0.5
|
|
CHC
|
G:HEM200
|
3.5
|
19.7
|
0.5
|
|
CHB
|
G:HEM200
|
3.5
|
29.1
|
0.5
|
|
C3A
|
G:HEM200
|
3.5
|
31.2
|
0.5
|
|
CHB
|
G:HEM200
|
3.5
|
20.4
|
0.5
|
|
C1B
|
G:HEM200
|
3.6
|
28.3
|
0.5
|
|
CG2
|
G:ILE95
|
3.8
|
32.2
|
0.5
|
|
O
|
G:ILE95
|
4.0
|
29.4
|
0.5
|
|
ND1
|
G:HIS99
|
4.0
|
19.8
|
0.5
|
|
CG
|
G:HIS99
|
4.1
|
19.9
|
0.5
|
|
C2D
|
G:HEM200
|
4.1
|
22.2
|
0.5
|
|
C3D
|
G:HEM200
|
4.1
|
23.3
|
0.5
|
|
NC
|
G:HEM200
|
4.2
|
29.2
|
0.5
|
|
C2A
|
G:HEM200
|
4.2
|
22.8
|
0.5
|
|
C3A
|
G:HEM200
|
4.2
|
21.7
|
0.5
|
|
C3C
|
G:HEM200
|
4.3
|
20.8
|
0.5
|
|
C2C
|
G:HEM200
|
4.3
|
20.3
|
0.5
|
|
C2B
|
G:HEM200
|
4.3
|
19.3
|
0.5
|
|
C3B
|
G:HEM200
|
4.3
|
19.9
|
0.5
|
|
CG1
|
G:VAL98
|
4.3
|
30.3
|
0.5
|
|
C4B
|
G:HEM200
|
4.3
|
27.9
|
0.5
|
|
C1D
|
G:HEM200
|
4.3
|
30.1
|
0.5
|
|
CB
|
G:VAL98
|
4.4
|
30.7
|
0.5
|
|
CB
|
G:HIS99
|
4.5
|
26.7
|
0.5
|
|
CAA
|
G:HEM200
|
4.6
|
33.5
|
0.5
|
|
C3D
|
G:HEM200
|
4.6
|
30.7
|
0.5
|
|
CMA
|
G:HEM200
|
4.7
|
31.4
|
0.5
|
|
C2B
|
G:HEM200
|
4.8
|
27.0
|
0.5
|
|
N
|
G:HIS99
|
4.8
|
27.7
|
0.5
|
|
C
|
G:ILE95
|
4.8
|
30.5
|
0.5
|
|
CBA
|
G:HEM200
|
4.9
|
34.5
|
0.5
|
|
C1C
|
G:HEM200
|
5.0
|
29.5
|
0.5
|
|
Iron binding site 8 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 8 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 8 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Fe200
b:28.6
occ:0.50
|
FE
|
G:HEM200
|
0.0
|
28.6
|
0.5
|
|
C
|
G:CYN201
|
1.6
|
21.6
|
0.5
|
|
ND
|
G:HEM200
|
1.9
|
30.1
|
0.5
|
|
NC
|
G:HEM200
|
1.9
|
20.2
|
0.5
|
|
NE2
|
G:HIS99
|
2.0
|
23.7
|
0.5
|
|
NA
|
G:HEM200
|
2.0
|
29.5
|
0.5
|
|
NC
|
G:HEM200
|
2.1
|
29.2
|
0.5
|
|
NB
|
G:HEM200
|
2.1
|
28.7
|
0.5
|
|
N
|
G:CYN201
|
2.2
|
25.8
|
0.5
|
|
C4C
|
G:HEM200
|
2.5
|
20.9
|
0.5
|
|
FE
|
G:HEM200
|
2.5
|
20.3
|
0.5
|
|
C1C
|
G:HEM200
|
2.6
|
20.0
|
0.5
|
|
C4D
|
G:HEM200
|
2.9
|
30.1
|
0.5
|
|
CE1
|
G:HIS99
|
2.9
|
25.1
|
0.5
|
|
C1D
|
G:HEM200
|
2.9
|
30.1
|
0.5
|
|
CD2
|
G:HIS99
|
3.0
|
25.4
|
0.5
|
|
C1A
|
G:HEM200
|
3.0
|
30.9
|
0.5
|
|
C4B
|
G:HEM200
|
3.0
|
27.9
|
0.5
|
|
C4A
|
G:HEM200
|
3.0
|
29.7
|
0.5
|
|
C1B
|
G:HEM200
|
3.1
|
28.3
|
0.5
|
|
C4C
|
G:HEM200
|
3.1
|
29.5
|
0.5
|
|
C1C
|
G:HEM200
|
3.1
|
29.5
|
0.5
|
|
CHD
|
G:HEM200
|
3.1
|
21.4
|
0.5
|
|
NB
|
G:HEM200
|
3.1
|
19.8
|
0.5
|
|
ND
|
G:HEM200
|
3.2
|
21.2
|
0.5
|
|
C3C
|
G:HEM200
|
3.2
|
20.8
|
0.5
|
|
CHC
|
G:HEM200
|
3.3
|
19.7
|
0.5
|
|
C2C
|
G:HEM200
|
3.3
|
20.3
|
0.5
|
|
CHA
|
G:HEM200
|
3.4
|
30.4
|
0.5
|
|
C4B
|
G:HEM200
|
3.4
|
19.7
|
0.5
|
|
C1D
|
G:HEM200
|
3.4
|
21.3
|
0.5
|
|
CHD
|
G:HEM200
|
3.4
|
30.1
|
0.5
|
|
CHC
|
G:HEM200
|
3.5
|
28.5
|
0.5
|
|
CHB
|
G:HEM200
|
3.5
|
29.1
|
0.5
|
|
CE2
|
G:PHE44
|
3.6
|
18.9
|
0.5
|
|
CE1
|
G:TYR45
|
4.0
|
17.9
|
0.5
|
|
ND1
|
G:HIS99
|
4.0
|
25.2
|
0.5
|
|
NA
|
G:HEM200
|
4.0
|
20.9
|
0.5
|
|
CG
|
G:HIS99
|
4.1
|
25.8
|
0.5
|
|
NE2
|
G:HIS99
|
4.1
|
20.3
|
0.5
|
|
C1B
|
G:HEM200
|
4.2
|
20.1
|
0.5
|
|
C3D
|
G:HEM200
|
4.2
|
30.7
|
0.5
|
|
CD1
|
G:ILE48
|
4.2
|
21.8
|
0.5
|
|
C2D
|
G:HEM200
|
4.2
|
29.5
|
0.5
|
|
OH
|
G:TYR45
|
4.2
|
18.1
|
0.5
|
|
C2A
|
G:HEM200
|
4.2
|
32.0
|
0.5
|
|
CZ
|
G:PHE44
|
4.2
|
18.8
|
0.5
|
|
C3A
|
G:HEM200
|
4.2
|
31.2
|
0.5
|
|
C2B
|
G:HEM200
|
4.3
|
27.0
|
0.5
|
|
C3C
|
G:HEM200
|
4.3
|
30.5
|
0.5
|
|
C2C
|
G:HEM200
|
4.3
|
30.5
|
0.5
|
|
C3B
|
G:HEM200
|
4.3
|
27.4
|
0.5
|
|
CAC
|
G:HEM200
|
4.4
|
21.4
|
0.5
|
|
C4D
|
G:HEM200
|
4.4
|
22.2
|
0.5
|
|
CZ
|
G:TYR45
|
4.5
|
17.8
|
0.5
|
|
CMC
|
G:HEM200
|
4.5
|
20.1
|
0.5
|
|
C3B
|
G:HEM200
|
4.6
|
19.9
|
0.5
|
|
CE
|
G:MET72
|
4.7
|
20.2
|
0.5
|
|
CD2
|
G:PHE44
|
4.7
|
19.1
|
0.5
|
|
CD1
|
G:LEU68
|
4.7
|
24.8
|
0.5
|
|
C2D
|
G:HEM200
|
4.8
|
22.2
|
0.5
|
|
C4A
|
G:HEM200
|
4.8
|
20.8
|
0.5
|
|
CD2
|
G:HIS99
|
4.8
|
20.0
|
0.5
|
|
CHB
|
G:HEM200
|
4.9
|
20.4
|
0.5
|
|
C2B
|
G:HEM200
|
5.0
|
19.3
|
0.5
|
|
Iron binding site 9 out
of 9 in 5ohf
Go back to
Iron Binding Sites List in 5ohf
Iron binding site 9 out
of 9 in the Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced
 Mono view
 Stereo pair view
|
|
A full contact list of Iron with other atoms in the Fe binding
site number 9 of Globin Sensor Domain of Afgchk (Feiii Form) in Complex with Cyanide, Partially Reduced within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Fe200
b:19.9
occ:1.00
|
FE
|
H:HEM200
|
0.0
|
19.9
|
1.0
|
|
ND
|
H:HEM200
|
1.9
|
21.4
|
1.0
|
|
NA
|
H:HEM200
|
2.0
|
19.9
|
1.0
|
|
NC
|
H:HEM200
|
2.1
|
20.1
|
1.0
|
|
NB
|
H:HEM200
|
2.1
|
20.1
|
1.0
|
|
NE2
|
H:HIS99
|
2.1
|
21.8
|
1.0
|
|
C
|
H:CYN201
|
2.2
|
19.9
|
1.0
|
|
C4D
|
H:HEM200
|
2.9
|
22.4
|
1.0
|
|
C1D
|
H:HEM200
|
2.9
|
20.6
|
1.0
|
|
C1A
|
H:HEM200
|
3.0
|
22.1
|
1.0
|
|
C4A
|
H:HEM200
|
3.0
|
19.5
|
1.0
|
|
C4B
|
H:HEM200
|
3.0
|
19.9
|
1.0
|
|
C4C
|
H:HEM200
|
3.0
|
21.0
|
1.0
|
|
C1B
|
H:HEM200
|
3.1
|
19.3
|
1.0
|
|
C1C
|
H:HEM200
|
3.1
|
19.9
|
1.0
|
|
CD2
|
H:HIS99
|
3.1
|
22.2
|
1.0
|
|
CE1
|
H:HIS99
|
3.1
|
21.8
|
1.0
|
|
CHA
|
H:HEM200
|
3.4
|
22.0
|
1.0
|
|
N
|
H:CYN201
|
3.4
|
24.9
|
1.0
|
|
CHD
|
H:HEM200
|
3.4
|
20.7
|
1.0
|
|
CHC
|
H:HEM200
|
3.4
|
20.1
|
1.0
|
|
CHB
|
H:HEM200
|
3.4
|
19.2
|
1.0
|
|
C2D
|
H:HEM200
|
4.2
|
22.7
|
1.0
|
|
C2A
|
H:HEM200
|
4.2
|
21.8
|
1.0
|
|
C3D
|
H:HEM200
|
4.2
|
24.2
|
1.0
|
|
C3A
|
H:HEM200
|
4.2
|
20.2
|
1.0
|
|
ND1
|
H:HIS99
|
4.2
|
21.6
|
1.0
|
|
CG
|
H:HIS99
|
4.3
|
22.2
|
1.0
|
|
C3C
|
H:HEM200
|
4.3
|
21.3
|
1.0
|
|
C2C
|
H:HEM200
|
4.3
|
21.2
|
1.0
|
|
C2B
|
H:HEM200
|
4.3
|
19.8
|
1.0
|
|
C3B
|
H:HEM200
|
4.3
|
20.3
|
1.0
|
|
O
|
H:HOH349
|
4.9
|
19.5
|
1.0
|
|
Reference:
M.Stranava,
P.Man,
T.Skalova,
P.Kolenko,
J.Blaha,
V.Fojtikova,
V.Martinek,
J.Dohnalek,
A.Lengalova,
M.Rosulek,
T.Shimizu,
M.Martinkova.
Coordination and Redox State-Dependent Structural Changes of the Heme-Based Oxygen Sensor Afgchk Associated with Intraprotein Signal Transduction. J. Biol. Chem. V. 292 20921 2017.
ISSN: ESSN 1083-351X
PubMed: 29092908
DOI: 10.1074/JBC.M117.817023
Page generated: Tue Aug 6 07:05:45 2024
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