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Iron in PDB 5rxn: Combined Crystallographic Refinement and Energy Minimization of Rubredoxin at 1.2 Angstrom Resolution

Protein crystallography data

The structure of Combined Crystallographic Refinement and Energy Minimization of Rubredoxin at 1.2 Angstrom Resolution, PDB code: 5rxn was solved by K.D.Watenpaugh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 1.20
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 64.290, 64.290, 32.490, 90.00, 90.00, 120.00
R / Rfree (%) n/a / n/a

Iron Binding Sites:

The binding sites of Iron atom in the Combined Crystallographic Refinement and Energy Minimization of Rubredoxin at 1.2 Angstrom Resolution (pdb code 5rxn). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Combined Crystallographic Refinement and Energy Minimization of Rubredoxin at 1.2 Angstrom Resolution, PDB code: 5rxn:

Iron binding site 1 out of 1 in 5rxn

Go back to Iron Binding Sites List in 5rxn
Iron binding site 1 out of 1 in the Combined Crystallographic Refinement and Energy Minimization of Rubredoxin at 1.2 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Combined Crystallographic Refinement and Energy Minimization of Rubredoxin at 1.2 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe55

b:14.2
occ:1.00
SG A:CYS42 2.3 16.8 1.0
SG A:CYS9 2.3 15.6 1.0
SG A:CYS39 2.3 13.0 1.0
SG A:CYS6 2.3 12.5 1.0
HB3 A:CYS6 3.1 12.2 1.0
HB3 A:CYS39 3.2 14.6 1.0
CB A:CYS39 3.2 11.4 1.0
H A:CYS42 3.2 20.1 1.0
CB A:CYS6 3.2 8.3 1.0
H A:CYS9 3.2 10.6 1.0
HB3 A:CYS9 3.3 16.0 1.0
HB2 A:CYS39 3.3 14.6 1.0
HB3 A:CYS42 3.3 24.7 1.0
HB2 A:CYS6 3.4 12.2 1.0
CB A:CYS9 3.4 11.3 1.0
CB A:CYS42 3.4 15.2 1.0
HB3 A:TYR11 3.5 12.1 1.0
HG23 A:VAL44 3.6 12.5 1.0
N A:CYS42 3.8 16.2 1.0
N A:CYS9 3.8 10.0 1.0
HB A:VAL8 4.0 24.5 1.0
H A:TYR11 4.0 10.0 1.0
HB2 A:LEU41 4.0 19.7 1.0
CA A:CYS9 4.1 10.2 1.0
CA A:CYS42 4.1 13.3 1.0
HB2 A:TYR11 4.2 12.1 1.0
HB2 A:CYS9 4.2 16.0 1.0
HB2 A:CYS42 4.2 24.7 1.0
H A:VAL44 4.3 14.8 1.0
CB A:TYR11 4.3 10.6 1.0
HG13 A:VAL8 4.4 16.9 1.0
H A:LEU41 4.5 16.8 1.0
H A:GLY43 4.5 18.8 1.0
H A:GLY10 4.5 12.2 1.0
CG2 A:VAL44 4.5 13.7 1.0
HG22 A:VAL44 4.6 12.5 1.0
CA A:CYS39 4.6 11.0 1.0
CA A:CYS6 4.6 7.8 1.0
H A:VAL8 4.7 12.0 1.0
HZ A:PHE49 4.7 11.5 1.0
C A:CYS9 4.8 11.1 1.0
CB A:VAL8 4.8 15.6 1.0
C A:CYS42 4.8 16.1 1.0
C A:VAL8 4.8 13.6 1.0
N A:TYR11 4.8 10.0 1.0
C A:LEU41 4.9 29.8 1.0
N A:GLY10 4.9 10.3 1.0
N A:GLY43 4.9 14.7 1.0
HG21 A:VAL44 4.9 12.5 1.0
HA A:CYS39 4.9 12.8 1.0
HA A:CYS9 5.0 13.2 1.0
HA A:CYS6 5.0 11.3 1.0
HA A:CYS42 5.0 18.1 1.0
HD2 A:TYR11 5.0 16.2 1.0
CB A:LEU41 5.0 16.2 1.0
HG11 A:VAL44 5.0 19.9 1.0

Reference:

K.D.Watenpaugh, K.D.Watenpaugh. N/A N/A.
Page generated: Tue Aug 6 08:32:54 2024

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