Atomistry » Iron » PDB 5okd-5sx2 » 5sw7
Atomistry »
  Iron »
    PDB 5okd-5sx2 »
      5sw7 »

Iron in PDB 5sw7: Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound)

Protein crystallography data

The structure of Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound), PDB code: 5sw7 was solved by J.Soman, J.S.Olson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.72 / 1.85
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.381, 53.381, 192.743, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22.2

Iron Binding Sites:

The binding sites of Iron atom in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) (pdb code 5sw7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound), PDB code: 5sw7:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5sw7

Go back to Iron Binding Sites List in 5sw7
Iron binding site 1 out of 2 in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:33.1
occ:1.00
FE A:HEM201 0.0 33.1 1.0
C A:CMO202 1.8 23.9 1.0
NC A:HEM201 2.0 31.0 1.0
NB A:HEM201 2.0 29.0 1.0
NA A:HEM201 2.1 28.6 1.0
NE2 A:HIS87 2.1 32.6 1.0
ND A:HEM201 2.1 34.4 1.0
CE1 A:HIS87 3.0 31.9 1.0
O A:CMO202 3.0 47.0 1.0
C1C A:HEM201 3.0 30.8 1.0
C1B A:HEM201 3.0 30.2 1.0
C4A A:HEM201 3.1 27.6 1.0
C4B A:HEM201 3.1 27.2 1.0
C4C A:HEM201 3.1 29.2 1.0
C1A A:HEM201 3.1 30.6 1.0
C1D A:HEM201 3.1 27.0 1.0
C4D A:HEM201 3.1 33.2 1.0
CD2 A:HIS87 3.2 34.3 1.0
CHB A:HEM201 3.4 29.5 1.0
CHC A:HEM201 3.5 30.3 1.0
CHA A:HEM201 3.5 33.1 1.0
CHD A:HEM201 3.5 29.5 1.0
ND1 A:HIS87 4.1 33.8 1.0
CG A:HIS87 4.3 31.3 1.0
C2C A:HEM201 4.3 30.7 1.0
C2B A:HEM201 4.3 30.8 1.0
C3B A:HEM201 4.3 31.1 1.0
C3C A:HEM201 4.3 31.3 1.0
C3A A:HEM201 4.3 31.2 1.0
C2A A:HEM201 4.3 30.7 1.0
C2D A:HEM201 4.3 32.2 1.0
C3D A:HEM201 4.3 33.2 1.0
NE2 A:HIS58 4.4 52.3 1.0

Iron binding site 2 out of 2 in 5sw7

Go back to Iron Binding Sites List in 5sw7
Iron binding site 2 out of 2 in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:40.4
occ:1.00
FE B:HEM201 0.0 40.4 1.0
C B:CMO202 1.7 32.4 1.0
NA B:HEM201 2.1 37.7 1.0
NB B:HEM201 2.1 38.5 1.0
ND B:HEM201 2.1 38.5 1.0
NE2 B:HIS92 2.1 34.1 1.0
NC B:HEM201 2.1 39.1 1.0
O B:CMO202 2.9 44.4 1.0
CE1 B:HIS92 3.1 39.1 1.0
C4D B:HEM201 3.1 40.0 1.0
CD2 B:HIS92 3.1 36.3 1.0
C1B B:HEM201 3.1 33.6 1.0
C4A B:HEM201 3.1 35.2 1.0
C1A B:HEM201 3.1 37.5 1.0
C1D B:HEM201 3.1 37.1 1.0
C4B B:HEM201 3.1 32.4 1.0
C4C B:HEM201 3.1 36.7 1.0
C1C B:HEM201 3.1 38.0 1.0
CHB B:HEM201 3.4 33.4 1.0
CHA B:HEM201 3.5 41.6 1.0
CHD B:HEM201 3.5 35.0 1.0
CHC B:HEM201 3.5 35.2 1.0
ND1 B:HIS92 4.2 38.8 1.0
CG B:HIS92 4.2 37.4 1.0
C3D B:HEM201 4.3 41.9 1.0
C3A B:HEM201 4.3 35.7 1.0
C2D B:HEM201 4.3 37.6 1.0
C2A B:HEM201 4.3 40.5 1.0
C2B B:HEM201 4.3 35.0 1.0
C3B B:HEM201 4.3 37.6 1.0
C3C B:HEM201 4.3 34.9 1.0
C2C B:HEM201 4.3 36.7 1.0
NE2 B:HIS63 4.4 52.3 1.0
CG2 B:VAL67 4.7 57.1 1.0

Reference:

J.Soman, J.S.Olson. Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) To Be Published.
Page generated: Tue Aug 6 08:34:45 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy