Iron in PDB 5sw7: Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound)

Protein crystallography data

The structure of Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound), PDB code: 5sw7 was solved by J.Soman, J.S.Olson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.72 / 1.85
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 53.381, 53.381, 192.743, 90.00, 90.00, 90.00
R / Rfree (%) 18.6 / 22.2

Iron Binding Sites:

The binding sites of Iron atom in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) (pdb code 5sw7). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total 2 binding sites of Iron where determined in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound), PDB code: 5sw7:
Jump to Iron binding site number: 1; 2;

Iron binding site 1 out of 2 in 5sw7

Go back to Iron Binding Sites List in 5sw7
Iron binding site 1 out of 2 in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe201

b:33.1
occ:1.00
FE A:HEM201 0.0 33.1 1.0
C A:CMO202 1.8 23.9 1.0
NC A:HEM201 2.0 31.0 1.0
NB A:HEM201 2.0 29.0 1.0
NA A:HEM201 2.1 28.6 1.0
NE2 A:HIS87 2.1 32.6 1.0
ND A:HEM201 2.1 34.4 1.0
CE1 A:HIS87 3.0 31.9 1.0
O A:CMO202 3.0 47.0 1.0
C1C A:HEM201 3.0 30.8 1.0
C1B A:HEM201 3.0 30.2 1.0
C4A A:HEM201 3.1 27.6 1.0
C4B A:HEM201 3.1 27.2 1.0
C4C A:HEM201 3.1 29.2 1.0
C1A A:HEM201 3.1 30.6 1.0
C1D A:HEM201 3.1 27.0 1.0
C4D A:HEM201 3.1 33.2 1.0
CD2 A:HIS87 3.2 34.3 1.0
CHB A:HEM201 3.4 29.5 1.0
CHC A:HEM201 3.5 30.3 1.0
CHA A:HEM201 3.5 33.1 1.0
CHD A:HEM201 3.5 29.5 1.0
ND1 A:HIS87 4.1 33.8 1.0
CG A:HIS87 4.3 31.3 1.0
C2C A:HEM201 4.3 30.7 1.0
C2B A:HEM201 4.3 30.8 1.0
C3B A:HEM201 4.3 31.1 1.0
C3C A:HEM201 4.3 31.3 1.0
C3A A:HEM201 4.3 31.2 1.0
C2A A:HEM201 4.3 30.7 1.0
C2D A:HEM201 4.3 32.2 1.0
C3D A:HEM201 4.3 33.2 1.0
NE2 A:HIS58 4.4 52.3 1.0

Iron binding site 2 out of 2 in 5sw7

Go back to Iron Binding Sites List in 5sw7
Iron binding site 2 out of 2 in the Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 2 of Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Fe201

b:40.4
occ:1.00
FE B:HEM201 0.0 40.4 1.0
C B:CMO202 1.7 32.4 1.0
NA B:HEM201 2.1 37.7 1.0
NB B:HEM201 2.1 38.5 1.0
ND B:HEM201 2.1 38.5 1.0
NE2 B:HIS92 2.1 34.1 1.0
NC B:HEM201 2.1 39.1 1.0
O B:CMO202 2.9 44.4 1.0
CE1 B:HIS92 3.1 39.1 1.0
C4D B:HEM201 3.1 40.0 1.0
CD2 B:HIS92 3.1 36.3 1.0
C1B B:HEM201 3.1 33.6 1.0
C4A B:HEM201 3.1 35.2 1.0
C1A B:HEM201 3.1 37.5 1.0
C1D B:HEM201 3.1 37.1 1.0
C4B B:HEM201 3.1 32.4 1.0
C4C B:HEM201 3.1 36.7 1.0
C1C B:HEM201 3.1 38.0 1.0
CHB B:HEM201 3.4 33.4 1.0
CHA B:HEM201 3.5 41.6 1.0
CHD B:HEM201 3.5 35.0 1.0
CHC B:HEM201 3.5 35.2 1.0
ND1 B:HIS92 4.2 38.8 1.0
CG B:HIS92 4.2 37.4 1.0
C3D B:HEM201 4.3 41.9 1.0
C3A B:HEM201 4.3 35.7 1.0
C2D B:HEM201 4.3 37.6 1.0
C2A B:HEM201 4.3 40.5 1.0
C2B B:HEM201 4.3 35.0 1.0
C3B B:HEM201 4.3 37.6 1.0
C3C B:HEM201 4.3 34.9 1.0
C2C B:HEM201 4.3 36.7 1.0
NE2 B:HIS63 4.4 52.3 1.0
CG2 B:VAL67 4.7 57.1 1.0

Reference:

J.Soman, J.S.Olson. Structure of the Human Hemoglobin Mutant Hb Providence (A-Gly-C:V1M; B,D:V1M,K82D; Ferrous, Carbonmonoxy Bound) To Be Published.
Page generated: Sun Dec 13 16:11:34 2020

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