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Iron in PDB 5twt: Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum)

Enzymatic activity of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum)

All present enzymatic activity of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum):
1.11.1.7;

Protein crystallography data

The structure of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum), PDB code: 5twt was solved by T.W.Moural, C.Kang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.55 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.854, 59.432, 96.874, 90.00, 90.00, 90.00
R / Rfree (%) 13.5 / 14.5

Other elements in 5twt:

The structure of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum) also contains other interesting chemical elements:

Calcium (Ca) 2 atoms

Iron Binding Sites:

The binding sites of Iron atom in the Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum) (pdb code 5twt). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum), PDB code: 5twt:

Iron binding site 1 out of 1 in 5twt

Go back to Iron Binding Sites List in 5twt
Iron binding site 1 out of 1 in the Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum)


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Characterization of Class III Peroxidase From Switchgrass (Panicum Virgatum) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:8.4
occ:1.00
 FE A:HEM301 0.0 8.4 1.0
ND A:HEM301 2.0 8.3 1.0
NB A:HEM301 2.0 10.5 1.0
NA A:HEM301 2.0 9.0 1.0
NC A:HEM301 2.0 9.4 1.0
NE2 A:HIS167 2.1 9.2 1.0
O A:HOH561 2.9 18.8 1.0
C1D A:HEM301 3.0 8.0 1.0
C1B A:HEM301 3.0 10.8 1.0
C4B A:HEM301 3.0 10.4 1.0
C1C A:HEM301 3.0 9.6 1.0
C4C A:HEM301 3.0 8.8 1.0
C4A A:HEM301 3.0 9.9 1.0
C4D A:HEM301 3.0 8.0 1.0
CE1 A:HIS167 3.1 9.6 1.0
C1A A:HEM301 3.1 9.1 1.0
CD2 A:HIS167 3.1 8.8 1.0
HE1 A:HIS167 3.2 11.5 1.0
HD2 A:HIS167 3.3 10.5 1.0
CHD A:HEM301 3.4 8.0 1.0
CHC A:HEM301 3.4 10.2 1.0
CHB A:HEM301 3.4 10.9 1.0
CHA A:HEM301 3.4 8.0 1.0
HE A:ARG38 3.9 13.9 1.0
HE2 A:PHE41 4.1 12.9 1.0
ND1 A:HIS167 4.2 8.8 1.0
C2D A:HEM301 4.2 8.8 1.0
C3D A:HEM301 4.2 8.7 1.0
C2B A:HEM301 4.2 11.4 1.0
C3B A:HEM301 4.2 11.6 1.0
C2C A:HEM301 4.2 10.4 1.0
C3C A:HEM301 4.3 9.9 1.0
C3A A:HEM301 4.3 10.6 1.0
HG3 A:ARG38 4.3 11.6 1.0
CG A:HIS167 4.3 7.7 1.0
C2A A:HEM301 4.3 9.7 1.0
HD2 A:ARG38 4.3 12.4 1.0
HHD A:HEM301 4.4 9.6 1.0
HHB A:HEM301 4.4 13.1 1.0
HHC A:HEM301 4.4 12.2 1.0
HHA A:HEM301 4.4 9.6 1.0
HD2 A:PHE41 4.5 12.6 1.0
NE A:ARG38 4.5 11.6 1.0
CE2 A:PHE41 4.8 10.7 1.0
CD A:ARG38 4.8 10.3 1.0
HD11 A:LEU233 4.9 12.8 1.0
HD1 A:HIS167 5.0 10.6 1.0
HD13 A:LEU210 5.0 13.1 1.0

Reference:

T.W.Moural, K.M.Lewis, C.Barnaba, F.Zhu, N.A.Palmer, G.Sarath, E.D.Scully, J.P.Jones, S.E.Sattler, C.Kang. Characterization of Class III Peroxidases From Switchgrass. Plant Physiol. V. 173 417 2017.
ISSN: ESSN 1532-2548
PubMed: 27879392
DOI: 10.1104/PP.16.01426
Page generated: Sun Dec 13 16:12:52 2020

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