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Iron in PDB 5u5y: Ccp Gateless Cavity

Protein crystallography data

The structure of Ccp Gateless Cavity, PDB code: 5u5y was solved by M.Fischer, B.K.Shoichet, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.22 / 1.30
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.260, 74.663, 106.937, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 19.3

Iron Binding Sites:

The binding sites of Iron atom in the Ccp Gateless Cavity (pdb code 5u5y). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Ccp Gateless Cavity, PDB code: 5u5y:

Iron binding site 1 out of 1 in 5u5y

Go back to Iron Binding Sites List in 5u5y
Iron binding site 1 out of 1 in the Ccp Gateless Cavity


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Ccp Gateless Cavity within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Fe301

b:13.3
occ:1.00
FE A:HEM301 0.0 13.3 1.0
NC A:HEM301 2.0 12.6 1.0
NB A:HEM301 2.0 13.6 1.0
NA A:HEM301 2.0 14.1 1.0
ND A:HEM301 2.0 12.9 1.0
NE2 A:HIS175 2.1 12.5 1.0
O A:HOH493 2.5 19.8 1.0
C1C A:HEM301 3.0 11.6 1.0
C1A A:HEM301 3.0 13.2 1.0
CE1 A:HIS175 3.0 13.3 1.0
CD2 A:HIS175 3.1 12.3 1.0
C4B A:HEM301 3.1 12.2 1.0
C4C A:HEM301 3.1 12.1 1.0
C4A A:HEM301 3.1 13.4 1.0
C1B A:HEM301 3.1 13.1 1.0
C4D A:HEM301 3.1 12.3 1.0
C1D A:HEM301 3.1 12.4 1.0
CHC A:HEM301 3.4 11.6 1.0
CHA A:HEM301 3.4 11.8 1.0
CHB A:HEM301 3.4 12.9 1.0
CHD A:HEM301 3.4 12.1 1.0
NE1 A:TRP51 4.1 14.7 1.0
ND1 A:HIS175 4.2 12.4 1.0
CG A:HIS175 4.2 12.0 1.0
C2C A:HEM301 4.2 12.0 1.0
C2A A:HEM301 4.3 14.8 1.0
C3C A:HEM301 4.3 11.8 1.0
C3A A:HEM301 4.3 14.1 1.0
C3B A:HEM301 4.3 13.1 1.0
C2B A:HEM301 4.3 13.3 1.0
C2D A:HEM301 4.3 12.9 1.0
C3D A:HEM301 4.3 13.2 1.0
O A:HOH665 4.4 22.8 1.0
CD1 A:TRP51 4.5 12.5 1.0
NE A:ARG48 4.5 15.6 0.4
C06 A:7W4302 4.5 15.7 0.9
CD A:ARG48 4.9 14.6 0.4
CG A:ARG48 5.0 13.8 0.4

Reference:

T.E.Balius, M.Fischer, R.M.Stein, T.B.Adler, C.N.Nguyen, A.Cruz, M.K.Gilson, T.Kurtzman, B.K.Shoichet. Testing Inhomogeneous Solvation Theory in Structure-Based Ligand Discovery. Proc. Natl. Acad. Sci. V. 114 E6839 2017U.S.A..
ISSN: ESSN 1091-6490
PubMed: 28760952
DOI: 10.1073/PNAS.1703287114
Page generated: Sun Dec 13 16:13:01 2020

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