Iron in PDB 5uqd: Dpy-21 in Complex with Fe(II) and Alpha-Ketoglutarate

The structure of Dpy-21 in Complex with Fe(II) and Alpha-Ketoglutarate, PDB code: 5uqd was solved by K.Brejc, Q.Bian, S.Uzawa, B.S.Wheeler, E.C.Anderson, D.S.King, P.Kranzusch, C.G.Preston, B.J.Meyer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.86 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	87.625, 97.883, 98.838, 90.00, 90.00, 90.00
R / Rfree (%)	16.3 / 19.3

The binding sites of Iron atom in the Dpy-21 in Complex with Fe(II) and Alpha-Ketoglutarate (pdb code 5uqd). This binding sites where shown within 5.0 Angstroms radius around Iron atom.
In total only one binding site of Iron was determined in the Dpy-21 in Complex with Fe(II) and Alpha-Ketoglutarate, PDB code: 5uqd:

Iron binding site 1 out of 1 in the Dpy-21 in Complex with Fe(II) and Alpha-Ketoglutarate


Mono view


Stereo pair view

A full contact list of Iron with other atoms in the Fe binding site number 1 of Dpy-21 in Complex with Fe(II) and Alpha-Ketoglutarate within 5.0Å range: probe atom residue distance (Å) B Occ A:Fe1702 b:21.4 occ:1.00 NE2 A:HIS1593 2.1 16.4 1.0 O1 A:AKG1701 2.1 29.9 1.0 NE2 A:HIS1452 2.2 21.8 1.0 OD1 A:ASP1454 2.2 23.6 1.0 O5 A:AKG1701 2.3 23.8 1.0 O A:HOH1822 2.3 32.1 1.0 C1 A:AKG1701 2.8 29.8 1.0 C2 A:AKG1701 2.8 27.5 1.0 CE1 A:HIS1593 3.0 19.7 1.0 CD2 A:HIS1452 3.1 18.1 1.0 CG A:ASP1454 3.1 26.2 1.0 CE1 A:HIS1452 3.1 20.3 1.0 CD2 A:HIS1593 3.2 18.2 1.0 OD2 A:ASP1454 3.4 30.5 1.0 O2 A:AKG1701 4.0 31.5 1.0 ND1 A:HIS1593 4.2 17.5 1.0 ND1 A:HIS1452 4.2 19.8 1.0 CG A:HIS1452 4.2 21.1 1.0 CG A:HIS1593 4.3 17.6 1.0 C3 A:AKG1701 4.3 29.6 1.0 CB A:ASP1454 4.5 22.3 1.0 C1 A:PG01703 4.6 45.3 1.0 CD1 A:LEU1587 4.7 16.9 1.0 C4 A:AKG1701 4.7 26.8 1.0 OTT A:PG01703 4.7 45.6 1.0

K.Brejc, Q.Bian, S.Uzawa, B.S.Wheeler, E.C.Anderson, D.S.King, P.J.Kranzusch, C.G.Preston, B.J.Meyer. Dynamic Control of X Chromosome Conformation and Repression By A Histone H4K20 Demethylase. Cell V. 171 85 2017.
ISSN: ISSN 1097-4172
PubMed: 28867287
DOI: 10.1016/J.CELL.2017.07.041